Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02706 ATGAATTTTAATATCCAAACTTCCAAAGCACTATCAAATATTTTGGTTCGGATATCTCTAACAATCTTGCTTCTCCTCATTGGCGCTCGGGTTGCCTACAGTTTCCAAAATACAAGTGTTGGCGTGCTCATTGATGTCAATTCAAAGACAGGAAAACAACAGAGAAGGGCCATGCAAATTGCAGCACAAAATTTCAATAATCATTCACAGAACCACAACATAAACCTTTTCTTCCGCGACTCTGGTGGAATTCCATTACAAGCAGCTTCATCTGCTGAAGAACTGATCATTAAGAAAAAAGTTGAAGTCATTATTGTCACGGGGACATGGCAAGAAGCAACTCTAGTTGCTGATCGTGGAAACAGCGCTCAAATTCCAATTATTTCATTTTCTTCTCCCCCAATAATCCCTCCTGTTTCAATGCAACATCGTTGGCCTTTTCTGATTCAAATGTCAAAAGATCAGGCCGCACAAATAAACTGCATTGCAGATATTATCCATGAGTTCAATTGGCAGAAGGTTATAGCTATATATGAAGACAACCCTTACAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGGTGACTCTCAGATGGAGAACTGCTTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGTTTGTTCTGGACGAATTGCTTAAGCTTTTGCCACTGCAATCTCGTGTTTTTGTTGTTCTTCACGCAACATTCCCTATGATTACCCATTTGTTCAGAGAAGCTAAGAAAATTGGATTGTTGGGGAAAAATTCAGCTTGGATAATGAACGAGGGGGTCACAAGTATGTTAGACTTTGCAAATAAATCTGTTTTATCCTCTATGGAAGGTACTTTAGGAATCAAAACCTATTATTCTACAAGTTCTCTTTCTTATAACCAATTGCAGGAAAATTTCCAACCTGATGAGCATACAAAACCAGGATCAGATGCATTGCAAGCTTATGATAGCGTTACATTAATCACAAAGGCCTTGGAGAGAATGAATGGCAAATCTAGTAATTCAAGGGTGTTGTTGGAAAAATTGTTATCTAGCGATTTCAATGGTTTAAGTGGTAATATAAGCTTCAAAGATGGTCATCTATTCAAAACTCCTGTGTTGAGAGTGATAAACGTGGTTAATAGGGAATGCAAGGAATTAGATTTTTGGACCCCGAAATTGAAGTTTGGTAAATCTCTTAAAATACTGAAAGACAGAGAAACAAAAGGTGATTATGCTACAAATATCTTTCTTGGCCCAGTGGTTTGGCCAGGAGGCCTCACTTCTGCTGATCCTAAGGGATGGAAAATGCCGACTGACGCAGAACCTTTGAAAGTGGCAATTCCTATAAACCCTTTTTTTGAAAATTTTCTGAAAGAAGACCCTCCAAAGAAATATGATGGTTTCTGTATTCGTCTTTTCCTCGAGGCAAGAAAAATTCTGAGTTACAAGTATGGTGACCTTCCCTATGTACTTGAGCCCTTCAATGAATCCTATGATAAGCTTCTACTGAATGTAATAGAAAAGTCCCACCATGCTATTGTTGGAGATGTAACAATACTCGCCAACCGATCAAAGGATGTGTCGTTCACTCTACCATACACTGATTCGAGTTTATCAGTTATATTTCCCATAGAGACTGAAGGGTCAACGTGGTTGTTTATGAAACCCTTTAGCTGGGAAATGTGGCTCGTTACTATTTGCATTCTCATCTACACAGTGTTCACCGTATGGTTCCTGGAGCATGAGTTCAATCCAGATTTTGGTGGTCCATTGGAAAATCAGATCAGCACCACACTATGGTTTGCCTTTTCTTCTCTATTTTTTGCTCATAGGGAGAGAATAAGAAGCAACTCTGCACGAGTAGTAGTTGCTGCATGGCTTTTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCCAACCTTTCCTCAATGCTAACTGTCAAACGATTTTCACAAAGAGATATTCAGTGGCTAAAGCAAAACAGTTTATCAGTTGGTTGTGAAAACCGCAGTTCCTTTGTAAAGAACTACATGATACATGTGTATGAGTTCCATCCAAATCAAATAATACACGTTGATGGAGAACATGACATTGTAGATAAATTCAAAAGCAAAAAAATGCATGCTCTCTTTCTTGAAAGCCCGTATGAGAGGGTTTTCGTGAACAAGTACCCCAAGGATTACACTGCAATTACAGCTGCCAATAAATTTGGAGGATTTGGCTTTGTATTTCAAAAAGGATCTCCCCTGGCTAGAGATTTTTCTGAAGCCATTTTAACACTGGCAGAAAATGGAAAACTAAAACATTTGGAAGAGCGCTGGTTGACTCCTCACTCAAACCGTTCTCCAGAAACTGAGAGCCTGACCCTCCCCAACTTCTGGATTCTCTATGTCATGTGTGCTGTCATATCCACCATCTGCTTGGTGCTGTTTGTCAGCAGCCAAACAGAAGTTGCAGATTACTAG 2487 0.3949 MNFNIQTSKALSNILVRISLTILLLLIGARVAYSFQNTSVGVLIDVNSKTGKQQRRAMQIAAQNFNNHSQNHNINLFFRDSGGIPLQAASSAEELIIKKKVEVIIVTGTWQEATLVADRGNSAQIPIISFSSPPIIPPVSMQHRWPFLIQMSKDQAAQINCIADIIHEFNWQKVIAIYEDNPYSGDSGMLSLFSEALQKGDSQMENCLVLPSFTSLSDPKGFVLDELLKLLPLQSRVFVVLHATFPMITHLFREAKKIGLLGKNSAWIMNEGVTSMLDFANKSVLSSMEGTLGIKTYYSTSSLSYNQLQENFQPDEHTKPGSDALQAYDSVTLITKALERMNGKSSNSRVLLEKLLSSDFNGLSGNISFKDGHLFKTPVLRVINVVNRECKELDFWTPKLKFGKSLKILKDRETKGDYATNIFLGPVVWPGGLTSADPKGWKMPTDAEPLKVAIPINPFFENFLKEDPPKKYDGFCIRLFLEARKILSYKYGDLPYVLEPFNESYDKLLLNVIEKSHHAIVGDVTILANRSKDVSFTLPYTDSSLSVIFPIETEGSTWLFMKPFSWEMWLVTICILIYTVFTVWFLEHEFNPDFGGPLENQISTTLWFAFSSLFFAHRERIRSNSARVVVAAWLFLVFVLTSSYTANLSSMLTVKRFSQRDIQWLKQNSLSVGCENRSSFVKNYMIHVYEFHPNQIIHVDGEHDIVDKFKSKKMHALFLESPYERVFVNKYPKDYTAITAANKFGGFGFVFQKGSPLARDFSEAILTLAENGKLKHLEERWLTPHSNRSPETESLTLPNFWILYVMCAVISTICLVLFVSSQTEVADY 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02706 828 CDD PBP1_GABAb_receptor_plant 39 406 IPR044440 -
Viun6g02706 828 PIRSF IGluLR_plant 9 825 IPR017103 -
Viun6g02706 828 Pfam Receptor family ligand binding region 55 385 IPR001828 -
Viun6g02706 828 SMART GluR_14 451 784 IPR001320 GO:0015276|GO:0016020
Viun6g02706 828 FunFam Glutamate receptor 557 686 - -
Viun6g02706 828 Pfam Bacterial extracellular solute-binding proteins, family 3 467 783 IPR001638 -
Viun6g02706 828 SUPERFAMILY Periplasmic binding protein-like II 424 783 - -
Viun6g02706 828 FunFam Glutamate receptor 158 322 - -
Viun6g02706 828 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 819 IPR015683 -
Viun6g02706 828 Gene3D - 445 557 - -
Viun6g02706 828 Gene3D - 722 789 - -
Viun6g02706 828 Gene3D - 558 694 - -
Viun6g02706 828 Gene3D - 36 159 - -
Viun6g02706 828 Pfam Ligand-gated ion channel 784 808 IPR001320 GO:0015276|GO:0016020
Viun6g02706 828 Gene3D - 160 340 - -
Viun6g02706 828 SUPERFAMILY Periplasmic binding protein-like I 40 397 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02706 Viun-Chr6 31091505 31094689 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02706 40 821 Ion Channels AT2G29120 33.293 1.48e-129 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02706 - - vun:114188616 1591.25