Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02703 ATGGGTTCCAAAGACAAGCATGAAGATGAAGAATCACTTAGTATAGGCCTAAAGGTGATGCTAGCAGCAGCTATCTCTTTATTTGGTATGATCTCAATAATCATCATCTTCCATTTTAGTATGAAATATTTCATCATACGGCAACGAAGGAGACGCCAAAACGAGCTTCTTCACCAGATCACCACCCAGATTGCACCGATTGATGTGAGTTCTGTGGAGGCACGCAACCCTGGACTTCAAACTTCCATCATAGCCTCTCTGCCTAAACTTTTGTTCAACCAAACGGAACAGTTCAAGCAAGGTGAAGTGATAGAGTGTTCGGTTTGCCTAGCCACTGTTACTAAGGATGCAATTATCAGAGTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAATTGTAACTCCACATGCCCAATTTGCCGCACTGTGGTTGACCCAAAGGTGGCACCAGAAGAAGAAGACGGTGATTTAGGCACAAGGATCCAGCAAGTCCAACCCACAGCACCACCTGTTGTGGGTGATGGTGAGGTGCATGATGGAACTGAAATGGAGAAGGTGGGGTGTTCAGGTTTGAGAATTGGATCTTTCCATAGGATGGTTAGTAACAGGGAAAGATCAGGGAGGAATCACAGTTGTGATGAATCTACAATAGATATAGAAAGACACTAA 690 0.4304 MGSKDKHEDEESLSIGLKVMLAAAISLFGMISIIIIFHFSMKYFIIRQRRRRQNELLHQITTQIAPIDVSSVEARNPGLQTSIIASLPKLLFNQTEQFKQGEVIECSVCLATVTKDAIIRVLPNCKHIFHVDCVDKWFNCNSTCPICRTVVDPKVAPEEEDGDLGTRIQQVQPTAPPVVGDGEVHDGTEMEKVGCSGLRIGSFHRMVSNRERSGRNHSCDESTIDIERH 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02703 229 SMART ring_2 106 147 IPR001841 -
Viun6g02703 229 SUPERFAMILY RING/U-box 93 154 - -
Viun6g02703 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 158 - -
Viun6g02703 229 Pfam Ring finger domain 105 148 IPR001841 -
Viun6g02703 229 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Viun6g02703 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Viun6g02703 229 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02703 Viun-Chr6 31067960 31068649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02703 9 229 C3H Transcription Factor Family AT2G42360 33.628 1.58e-35 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02703 K19038 - gmx:100786701 315.464