Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02666 ATGGCCGAGGAATCTCAAGGGATTAAGCTGTTTGGCGCAATGATTAGACTGAACAGTGAGGAGGTAAAGAAGGGAGAAAAGGGAAGGGAATACAACAAGAGGGAGGAGAAGAGAACAGAGAAGATAATAGCGTGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTACTTCAATAACTACAACGTTAATCAGCCGAGGCATTTTTGTAAGAGCTGCCAGAGGTATTGGACTGCTGGTGGGGCCCTCCGAAACGTCGCCGTCGGAGCCGGTCGTCGGAAGGGCAAGCCGCCTGGTCATGGTGGCGCTGAGTTCCCCGATGGGGCTGTCTATGAAAGTTCCGAAGATGAGAACAAATTTGAGATGGGAAATAGGTTGCTTTCGGAAGAGGTTCACACTGATTTCCGGCAAATTTTCCCGGCGGCAAAGCGGCGGAGGACTCCATCAGTTGAGCATGAAGGTCAATAA 468 0.4957 MAEESQGIKLFGAMIRLNSEEVKKGEKGREYNKREEKRTEKIIACPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVAVGAGRRKGKPPGHGGAEFPDGAVYESSEDENKFEMGNRLLSEEVHTDFRQIFPAAKRRRTPSVEHEGQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02666 155 PANTHER CYCLIC DOF FACTOR 2 28 96 IPR045174 GO:0003700|GO:0006355
Viun6g02666 155 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Viun6g02666 155 Pfam Dof domain, zinc finger 41 96 IPR003851 GO:0003677|GO:0006355
Viun6g02666 155 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02666 Viun-Chr6 30898943 30900716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02666 2 145 C2C2-Dof Transcription Factor Family AT2G34140 50.595 2.15e-47 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun6g02666 zf-Dof 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02666 - - gmx:100820604 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02666 6 30898943 30900716 Viun6g02666 6 30898943 30900716 ECH