Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02648 ATGTCAGAAGGACATGAGATTCATAACAATGAGGAAACTTCATCGGGATGTTCCCAGAAATGCTCTACATTTGACTTGAATGCAGAAGCTTGCAGTGACGATAACACTAATGGTAATGCAGAAGAGGGGTATGAGTTCACAACTAACGACAATAATATTGAGAAAGTAAAGGAGGAGGGAACTTCAGGAAATGGAAGTAGCATTTCAAGAGAAGGCAATGACAGAAGAGGAACGGTGAGACAATATGTTAGATCCAAGATGCCTCGGCTTCGGTGGACTCCTGAACTTCATCATTCATTTGTGCATGTTGTTGAAAGACTTGGTGGTCAAGACAGAGCAACACCCAAGTTGGTGCTTCAGCTAATGAATGTTCAAGGACTCAGCATTGCTCACGTCAAGAGCCACTTGCAGATGTATCGAAGCAAGAAACTTGACGAGGTTGGGCAAGTACTAAGTCAAACCTATAGGTGGAACCAAAACCAAAAGTTACGTAGGTCTGTGATACTCCATGAGTCCATGAGTCCTCAACAACATCTTAAGATGGGGAATGGTGGAATCATTCTGGCAACTCAATTCAACAAACATTATCATTTCCCAAGTCACACTGATTCAAGGCAGCAACAATGGTACATCAATCATCAACCTTTTATAAAATCAATAGGTTGTGGCCAAATTCAGCCAAAGGATACAACTACGAGACCAAGCAAATTGCTTGAAGAAAAAAGCTGGCTTCCGTTAGAAATTATAAACAATCATCAATCCAAGTTCCAGAAGTTACCTGCCATTGTAGCTCCTAAAAATGGATCACAAGCAGTTCAGCCAGATGAATGGAGCTTCGTGAACAACACAAGCGTCACAGAATATTTATCTAACAAATCCAATGAACCTCGCAATTATTCCAACAGTTTAAAGCTAGAATTTGATCCACCATTTCGGATTAAGAAAGACGAGCAAGAATTACCGAATTTGCAACTGGGTTTGAGTTACTCAGTTGCAAGCGATGGTGGCAAGGTGGATCATTACAGAGAAACCCAAGAAATCAGCACTAAGCTTTCACTTTCTTAA 1065 0.4085 MSEGHEIHNNEETSSGCSQKCSTFDLNAEACSDDNTNGNAEEGYEFTTNDNNIEKVKEEGTSGNGSSISREGNDRRGTVRQYVRSKMPRLRWTPELHHSFVHVVERLGGQDRATPKLVLQLMNVQGLSIAHVKSHLQMYRSKKLDEVGQVLSQTYRWNQNQKLRRSVILHESMSPQQHLKMGNGGIILATQFNKHYHFPSHTDSRQQQWYINHQPFIKSIGCGQIQPKDTTTRPSKLLEEKSWLPLEIINNHQSKFQKLPAIVAPKNGSQAVQPDEWSFVNNTSVTEYLSNKSNEPRNYSNSLKLEFDPPFRIKKDEQELPNLQLGLSYSVASDGGKVDHYRETQEISTKLSLS 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02648 354 Gene3D - 87 145 - -
Viun6g02648 354 SUPERFAMILY Homeodomain-like 86 142 IPR009057 -
Viun6g02648 354 Pfam Myb-like DNA-binding domain 90 140 IPR001005 -
Viun6g02648 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 62 184 IPR046955 GO:0003700
Viun6g02648 354 MobiDBLite consensus disorder prediction 34 78 - -
Viun6g02648 354 MobiDBLite consensus disorder prediction 34 50 - -
Viun6g02648 354 MobiDBLite consensus disorder prediction 58 72 - -
Viun6g02648 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 88 143 IPR006447 GO:0003677
Viun6g02648 354 FunFam Myb family transcription factor 86 144 - -
Viun6g02648 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 144 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02648 Viun-Chr6 30802589 30806950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02648 79 145 G2-like Transcription Factor Family AT2G42660 80.597 7.54e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun6g02648 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02648 - - vun:114187451 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02648 6 30802589 30806950 Viun6g02648 6 30802589 30806950 ECH
Viun6g02648 6 30802589 30806950 Viun3g01323 3 8355604 8362443 ECH
Viun3g01323 3 8355604 8362443 Viun6g02648 6 30802589 30806950 PCT