Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02645 ATGGAACTAAGATGGAACACATTTGGATTTTGTCTGAGAATTTATATTTTCTTGTTCTCACTATGGGGAATCCGAGATTGTTGTTCCGTTAATGATGAAGGACTGGCTTTGTTAGCGTTCCAAGCGAGAATAACTAGTGATCCCTTTAATGCTTTGGTGAATTGGGATCCCAATGATTGTAACCCTTGCGAGTGGTTGGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTGTTGGACTTAAAAGGGTTATCATTGGAAGGGACGTTGGCTCCTGAACTTGGCAAACTTAGTCACCTAAATTCTATTGTATTATGCAAGAATAACTTTTCTGGTGCCATTCCCAAAGAACTTGGAGATTTACCCAAGCTAGAGTTATTAGATTTAAGGGAAAATAATTTGTCAGGAAACATCCCAGCAGAAATTGGCAACATGTCGTTATTAAAACACTTTGTGTGGCAACGTAGCTTCAACCAATGGTACAAATCAGATTCATTGATTATTCTAACGAAAGCAAAACTTAAGAAATTCGCCAATGCCTTTGCTTGGCCACTATTGAAGCTAGGGAAGACTGCCTCTCATAGCAATGAAGCGGATTATTGTGACATTCTGCCCAGTTCTGATGTGCCAAAGATAGCCCAAAATGTACCAGAAATTGTTAGTTCGACACGTCGTAAGTTACTTCAGTCTAGTGGTAATAACCTTGCAGCTGTACCTTTCAGTGACAAAACACCAATAGAGTTTAGCACTGCTCCAACTACCTTCAGTAGTGGAGCTATTCCTGCTGTTCCAGAAGCCATCGAGAAAAAAAATCGGCCTGCACCCTCAGATCCGGATTCTAATGCTCCTGATGATGCTTCTGATGAAAATCAATCAGACAATGTTTCTGATGAAAATCAATCACAAGATGCTTCCGATGGAAATCAAGCAAGCCAACAACATTTAAATAATGGTGCTTCTACGTGGAAGTGGATAATTATTTTTCTTCTTCTTCTGCTGGTCATTATTATCATAATTCTTTTATACATTTGGCGAAAACGAGCCGCAAAAGTAATACGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCGGAAAGCATTTATAACAGGGGTTCCCAAGTTGGATAGAGGAGAATTAGAGACAGCCTGTGAAGATTTTAGCAATATTGTTGTTGATGGTTATGCCGGGTGCACCATCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTAGTTACTTCTTCTAAGAATTGGTCAAAGAGCATGGAGCTAAGATACCGCAAAAAGATTGATACTTTGTCTCGCATAAATCATAAGAACTTTGTTAATCTTATTGGCTACTGCGAAGAACAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAACGTGTTTGAGCATTTACATGGTACAACTCTTTGTTTTCGTTTTGCTAGAGAAAAATGGATTTTATCTGTGTTCTTAAAACTAAAAGTTCTGTATGTTTTAGTTGCGGATTTGGAACGTCTTGATTGGAGTGCAAGGATAAAGATTATCATGGGGATTGCGTATTGCCTTCAATACATGCACCATGACTTAAATCCACCTCTGGCACAAAGCAACCTTACTTCAAATATGATATTTTTAACAGATGATTTTTCTGCTAAGGTTGCAGAAGTTACTTTTAGACATATTGTGTCACCAGAGAACTCGGGTGATTCAAAGAAATCTGATGATGGGCCATCCGAAGAGAATATTGAAACCAATATTTACAACTTTGGAGAGTTATTGCTGGAAATCATCTCAGGGAAATTATCTTACTCGGAAGAACATGGCAACCTAGTGGACTGGGCTGCTACGTACTTAAACGAGAAAACAAATCTCAAAGATTTGGTGGATCCCACCCTCCAATGTTTCAAGGAGAACGAACTTAATTGCATTTGTGATGTAATCCAAGATTGTATCCAACCTGATGAAAAGTTAAGACCAACAATGAGGGACGTGACTTCCAAATTAAGGGAAGTGCTTGGTTTGTCACCTGAGCAAGTTGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATATTGTCAGTGGACTCGACTTAA 2115 0.3939 MELRWNTFGFCLRIYIFLFSLWGIRDCCSVNDEGLALLAFQARITSDPFNALVNWDPNDCNPCEWLGVHCVDGKVQVLDLKGLSLEGTLAPELGKLSHLNSIVLCKNNFSGAIPKELGDLPKLELLDLRENNLSGNIPAEIGNMSLLKHFVWQRSFNQWYKSDSLIILTKAKLKKFANAFAWPLLKLGKTASHSNEADYCDILPSSDVPKIAQNVPEIVSSTRRKLLQSSGNNLAAVPFSDKTPIEFSTAPTTFSSGAIPAVPEAIEKKNRPAPSDPDSNAPDDASDENQSDNVSDENQSQDASDGNQASQQHLNNGASTWKWIIIFLLLLLVIIIIILLYIWRKRAAKVIRPWKTGISGQLRKAFITGVPKLDRGELETACEDFSNIVVDGYAGCTIYKGTLSSGVEIAVVSTLVTSSKNWSKSMELRYRKKIDTLSRINHKNFVNLIGYCEEQEPFTRMLVFEYAPNGNVFEHLHGTTLCFRFAREKWILSVFLKLKVLYVLVADLERLDWSARIKIIMGIAYCLQYMHHDLNPPLAQSNLTSNMIFLTDDFSAKVAEVTFRHIVSPENSGDSKKSDDGPSEENIETNIYNFGELLLEIISGKLSYSEEHGNLVDWAATYLNEKTNLKDLVDPTLQCFKENELNCICDVIQDCIQPDEKLRPTMRDVTSKLREVLGLSPEQVVPRLSPLWWAELEILSVDST 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02645 704 FunFam Inactive receptor-like serine/threonine-protein kinase 357 466 - -
Viun6g02645 704 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Viun6g02645 704 MobiDBLite consensus disorder prediction 292 312 - -
Viun6g02645 704 Pfam Protein tyrosine and serine/threonine kinase 397 673 IPR001245 GO:0004672|GO:0006468
Viun6g02645 704 Gene3D Phosphorylase Kinase; domain 1 361 466 - -
Viun6g02645 704 FunFam Leucine-rich repeat receptor-like kinase 34 151 - -
Viun6g02645 704 SUPERFAMILY Protein kinase-like (PK-like) 397 673 IPR011009 -
Viun6g02645 704 Gene3D Transferase(Phosphotransferase) domain 1 502 683 - -
Viun6g02645 704 SMART tyrkin_6 388 673 IPR020635 GO:0004713|GO:0006468
Viun6g02645 704 PANTHER PROTEIN MALE DISCOVERER 2 15 478 - -
Viun6g02645 704 SUPERFAMILY L domain-like 29 152 - -
Viun6g02645 704 Gene3D Ribonuclease Inhibitor 33 150 IPR032675 -
Viun6g02645 704 MobiDBLite consensus disorder prediction 268 312 - -
Viun6g02645 704 ProSiteProfiles Protein kinase domain profile. 383 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02645 Viun-Chr6 30779929 30785421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02645 27 678 Receptor kinase-like Gene Family AT2G42290 24.648 4.58e-40 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun6g02645 PK_Tyr_Ser-Thr 8.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02645 - - vun:114189247 1347.03