Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02643 ATGGAACTAAGATGGAACACATTTGGATTTTGTCTGAGAATTTATATTTTCTTGTTCTCACTATGGGGAATCCGAGATTGTTGTTCCGTTAATGATGAAGGACTGGCTTTGTTAGCGTTCCAAGCGAGAATAACTAGTGATCCCTTTAATGCTTTGGTGAATTGGGATCCCAATGATTGTAACCCTTGCGAGTGGTTGGGTGTTCATTGTGTAGATGGTAAAGTGCAAGTGTTGGACTTAAAAGGGTTATCATTGGAAGGGACGTTGGCTCCTGAACTTGGCAAACTTAGTCACCTAAATTCTATTGTGTGGCAACGTAGCTTCAACCAATGGTACAAATCAGATTCATTGATTATTCTAACGAAAGCAAAACTTAAGAAATTCGCCAATGCCTTTGCTTGGCCACTATTGAAGCTAGGGAAGACTGCCTCTCATAGCAATGAAGCGGATTATTGTGACATTCTGCCCAGTTCTGATGTGCCAAAGATAGCCCAAAATGTACCAGAAATTGTTAGTTCGACACGTCGTAAGTTACTTCAGTCTAGTGGTAATAACCTTGCAGCTGTACCTTTCAGTGACAAAACACCAATAGAGTTTAGCACTGCTCCAACTACCTTCAGTAGTGGAGCTATTCCTGCTGTTCCAGAAGCCATCGAGAAAAAAAATCGGCCTGCACCCTCAGATCCGGATTCTAATGCTCCTGATGATGCTTCTGATGAAAATCAATCAGACAATGTTTCTGATGAAAATCAATCACAAGATGCTTCCGATGGAAATCAAGCAAGCCAACAACATTTAAATAATGGTGCTTCTACGTGGAAGTGGATAATTATTTTTCTTCTTCTTCTGCTGGTCATTATTATCATAATTCTTTTATACATTTGGCGAAAACGAGCCGCAAAAGTAATACGCCCCTGGAAGACAGGAATAAGTGGACAGTTGCGGAAAGCATTTATAACAGGGGTTCCCAAGTTGGATAGAGGAGAATTAGAGACAGCCTGTGAAGATTTTAGCAATATTGTTGTTGATGGTTATGCCGGGTGCACCATCTACAAAGGAACATTGTCTAGTGGAGTTGAGATTGCTGTAGTTTCTACTCTAGTTACTTCTTCTAAGAATTGGTCAAAGAGCATGGAGCTAAGATACCGCAAAAAGATTGATACTTTGTCTCGCATAAATCATAAGAACTTTGTTAATCTTATTGGCTACTGCGAAGAACAAGAACCATTCACTAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAACGTGTTTGAGCATTTACATGGTACAACTCTTTGTTTTCGTTTTGCTAGAGAAAAATGGATTTTATCTGTGTTCTTAAAACTAAAAGTTCTGTATGTTTTAGTTGCGGATTTGGAACGTCTTGATTGGAGTGCAAGGATAAAGATTATCATGGGGATTGCGTATTGCCTTCAATACATGCACCATGACTTAAATCCACCTCTGGCACAAAGCAACCTTACTTCAAATATGATATTTTTAACAGATGATTTTTCTGCTAAGGTTGCAGAAGTTACTTTTAGACATATTGTGTCACCAGAGAACTCGGGTGATTCAAAGAAATCTGATGATGGGCCATCCGAAGAGAATATTGAAACCAATATTTACAACTTTGGAGAGTTATTGCTGGAAATCATCTCAGGGAAATTATCTTACTCGGAAGAACATGGCAACCTAGTGGACTGGGCTGCTACGTACTTAAACGAGAAAACAAATCTCAAAGATTTGGTGGATCCCACCCTCCAATGTTTCAAGGAGAACGAACTTAATTGCATTTGTGATGTAATCCAAGATTGTATCCAACCTGATGAAAAGTTAAGACCAACAATGAGGGACGTGACTTCCAAATTAAGGGAAGTGCTTGGTTTGTCACCTGAGCAAGTTGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATATTGTCAGTGGACTCGACTTAA 1971 0.3973 MELRWNTFGFCLRIYIFLFSLWGIRDCCSVNDEGLALLAFQARITSDPFNALVNWDPNDCNPCEWLGVHCVDGKVQVLDLKGLSLEGTLAPELGKLSHLNSIVWQRSFNQWYKSDSLIILTKAKLKKFANAFAWPLLKLGKTASHSNEADYCDILPSSDVPKIAQNVPEIVSSTRRKLLQSSGNNLAAVPFSDKTPIEFSTAPTTFSSGAIPAVPEAIEKKNRPAPSDPDSNAPDDASDENQSDNVSDENQSQDASDGNQASQQHLNNGASTWKWIIIFLLLLLVIIIIILLYIWRKRAAKVIRPWKTGISGQLRKAFITGVPKLDRGELETACEDFSNIVVDGYAGCTIYKGTLSSGVEIAVVSTLVTSSKNWSKSMELRYRKKIDTLSRINHKNFVNLIGYCEEQEPFTRMLVFEYAPNGNVFEHLHGTTLCFRFAREKWILSVFLKLKVLYVLVADLERLDWSARIKIIMGIAYCLQYMHHDLNPPLAQSNLTSNMIFLTDDFSAKVAEVTFRHIVSPENSGDSKKSDDGPSEENIETNIYNFGELLLEIISGKLSYSEEHGNLVDWAATYLNEKTNLKDLVDPTLQCFKENELNCICDVIQDCIQPDEKLRPTMRDVTSKLREVLGLSPEQVVPRLSPLWWAELEILSVDST 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02643 656 SUPERFAMILY Protein kinase-like (PK-like) 349 625 IPR011009 -
Viun6g02643 656 MobiDBLite consensus disorder prediction 244 264 - -
Viun6g02643 656 PANTHER PROTEIN MALE DISCOVERER 2 15 430 - -
Viun6g02643 656 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Viun6g02643 656 Gene3D Ribonuclease Inhibitor 33 126 IPR032675 -
Viun6g02643 656 SUPERFAMILY L domain-like 29 102 - -
Viun6g02643 656 Gene3D Transferase(Phosphotransferase) domain 1 454 635 - -
Viun6g02643 656 SMART tyrkin_6 340 625 IPR020635 GO:0004713|GO:0006468
Viun6g02643 656 FunFam Inactive receptor-like serine/threonine-protein kinase 309 418 - -
Viun6g02643 656 Pfam Protein tyrosine and serine/threonine kinase 349 625 IPR001245 GO:0004672|GO:0006468
Viun6g02643 656 ProSiteProfiles Protein kinase domain profile. 335 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02643 656 Gene3D Phosphorylase Kinase; domain 1 313 418 - -
Viun6g02643 656 MobiDBLite consensus disorder prediction 220 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02643 Viun-Chr6 30779929 30785421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02643 329 629 Receptor kinase-like Gene Family AT3G59420 29.560 1.36e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun6g02643 PK_Tyr_Ser-Thr 7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02643 - - vun:114189247 1203.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02643 6 30779929 30785421 Viun6g02643 6 30779929 30785421 ECH