Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02640 ATGGAGAAGAAAAAAATTGTGATGCAAAAGTACGAGATTGGACGGTTCCTTGGACAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGCGTGGCCGTGAAAGTGATCAACAAAGAGATGATGATGATGAAAGAGGGTATGAAGGATCAAATCAAGCGCGAAATCTCAGTGATGCGCCTTGTGAGGCATCCCAACATTGTACAGCTGCATGAGGTCATGGCAACAAAGACAAAGATATATTTTGCAATGGAATTGGTGAAAGGTGGTGAACTTTTTCATAAAGTGTCCCGAGGGAGGTTGAAGGAGGATGTGGCAAGAAAATATTTTCAGCAGCTGATTGATGCTGTTGATTATTGCCACAGCTTAGGGGTGTGTCATCGTGATCTCAAGCCAGAGAACCTTCTTCTCGATGAGAATGGGGATCTCAAGATTACGGATTTTGGTTTGAGCGCATTGGTTGAGTCCAGAAAGAAGGATGGTCTTCTTCACACGATGTGTGGAACTCCAGCCTATGTTGCTCCTGAGGTGATAAAGAATAAAGGATACGATGGAGCCAAGGCAGATATATGGTCTTGTGGAGTGATTCTCTATGTTCTTTTGGCAGGTTTTGTTCCTTTCAACGATAAGAATCTGATGGAGATGTATAAGAAGATTATCAGAGCAGATTGCCAGTTCCCAAAATGGTTCTCTACAGATGTGAAAAGACTTATTTATAGGATCCTTGATCCGAATCCAACCAGGAGAATTAATGTTGCTAAGATTGTGCAAAGTCGTTGGTTTAGTAAGGGGTATGTGCAGATTGTGGAATATCATCTGCCACCGTTGTTCCCTAGAAATGGTGATGATATGTTGGATGTTGAGGTTGTATTTGATTCATCAGATTTAGATGACAATGCAACGCCAACTAAAAAAGAAAGCCCCTCGAAGCTATATCAATTCAATGCATTTGATTTGATATCACTATCATCAGGTCTTGATCTTTCTGGTTTGTTTGAAAATGATCACAACGAAAGACAACTCACCAGATTTACTACCGGAGAAAGACCTTCAACTGTTGTATCGATGCTTGAAGAGATAGCACAGACAGATGATAAATTTAAAGTCTTGAAGAAAGATGGTGTTGTTAGATTGGAGGGATGCAAGATGGGACTAAAAGGCCAACTCATTCTAGATGCAGAAATTTTTCAAGTTACATCTTCCTTGCATGTTGTCGAGGTCAAAAAAGTTGCTGGAAACACATTAGAATACTTTAAATTCAGGGAACAGTACTTGAAACCTTCTCTGAATGAAATTATCTAA 1317 0.4032 MEKKKIVMQKYEIGRFLGQGNFAKVYHARNLKTGQSVAVKVINKEMMMMKEGMKDQIKREISVMRLVRHPNIVQLHEVMATKTKIYFAMELVKGGELFHKVSRGRLKEDVARKYFQQLIDAVDYCHSLGVCHRDLKPENLLLDENGDLKITDFGLSALVESRKKDGLLHTMCGTPAYVAPEVIKNKGYDGAKADIWSCGVILYVLLAGFVPFNDKNLMEMYKKIIRADCQFPKWFSTDVKRLIYRILDPNPTRRINVAKIVQSRWFSKGYVQIVEYHLPPLFPRNGDDMLDVEVVFDSSDLDDNATPTKKESPSKLYQFNAFDLISLSSGLDLSGLFENDHNERQLTRFTTGERPSTVVSMLEEIAQTDDKFKVLKKDGVVRLEGCKMGLKGQLILDAEIFQVTSSLHVVEVKKVAGNTLEYFKFREQYLKPSLNEII 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02640 438 FunFam Non-specific serine/threonine protein kinase 2 91 - -
Viun6g02640 438 ProSiteProfiles NAF domain profile. 314 338 IPR018451 GO:0007165
Viun6g02640 438 SMART serkin_6 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02640 438 ProSiteProfiles Protein kinase domain profile. 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02640 438 Pfam NAF domain 319 374 IPR004041 GO:0007165
Viun6g02640 438 Pfam Protein kinase domain 11 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02640 438 FunFam Non-specific serine/threonine protein kinase 314 438 - -
Viun6g02640 438 ProSitePatterns Protein kinases ATP-binding region signature. 17 40 IPR017441 GO:0005524
Viun6g02640 438 CDD CIPK_C 320 435 - -
Viun6g02640 438 SUPERFAMILY Protein kinase-like (PK-like) 7 321 IPR011009 -
Viun6g02640 438 FunFam Non-specific serine/threonine protein kinase 4 311 - -
Viun6g02640 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 422 - -
Viun6g02640 438 Gene3D Transferase(Phosphotransferase) domain 1 2 317 - -
Viun6g02640 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Viun6g02640 438 Gene3D Kinase associated domain 1, KA1 318 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02640 Viun-Chr6 30769327 30770942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02640 1 438 CBL-interacting serine-threonine protein kinases AT5G45820 59.091 0.0 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Viun6g02640 Pkinase 2.9e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02640 K07198 - gmx:100807927 669.077