LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02639	ATGGCCGACGTCGTTTCCAAGGCCCCTAGCGGCGCCAACCATACGAGCCATCACAAGAAGGACCCATCGAGCCTTCTATTGGGTCGTTTCGAGATTGGGAAACTCCTTGGACATGGAACCTTCGCAAAGGTCTACTACGCGCGGAACATGAAAACCGGCGAAGGCGTGGCCATCAAGGTAATCGACAAGGAGAAGATTCTGAAGGGAGGTTTGGTGGCACACATAAAGCGCGAGATCTCCATCCTCCGCCGCGTGCGCCACCCCAACATCGTGCAACTCTTCGAAGTAATGGCCACCAAGAGCAAGATCTATTTCGTAATGGAATACGTTCGCGGGGGCGAGCTTTTCAACAAGGTCGCGAAAGGAAGGCTCAAAGAAGAGGTTGCGAGGAAGTACTTTCAGCAGTTAATCTCCGCGGTGGGGTTCTGCCACGCCAGAGGGGTGTACCATAGAGATCTCAAACCTGAAAATCTCTTGCTTGATGAGAACGGTAATCTTAAGGTCTCTGATTTCGGGTTGAGTGCGGTTTCTGATCAAATCCGACAGGATGGGTTGTTTCACACTTTTTGTGGGACACCTGCGTATGTTGCTCCCGAAGTTTTGGCGAGGAAAGGATACGATGGTGCCAAGGTGGATCTCTGGTCTTGTGGGGTCGTGTTGTTTGTGTTGATGGCGGGGTATCTGCCCTTTCACGACCAGAATGTTATGGCAATGTATAAGAAGATTTACAGAGGGGAGTTTCGGTGTCCCAGGTGGTTTTCTCCTGATTTGTCCAGGCTTCTCACGAGGCTTCTTGACACCAAGCCCGAAACCCGGATTGCGATTCCCGAGATCATGGAGAACAAGTGGTTCAAGAAAGGGTTCAAGCAGATCAAGTTTTATGTTGAGGATGATAGGCTCTGCAATGTGGACGATGACGTGCTTTTGGACAACGATGACGATGTTGCTTCTGTTGCTTCTTTTTCGGATTACTCGGTTTCGGAGTCTGATACGGAGGTCGAAGTTAGGAGAAAGAATGGTCCTTTGCCTAGACCTCCTAGTTTGAATGCTTTCGACATTATATCGTTTTCCCCTGGGTTTAATCTCTCTGGGTTGTTTGAGGAGAAGGAGGATGAGACGAGGTTTGTGACCGCTGCACCAGTCAACAGGATTATTTCCAAATTGGAGGAGATTGCCCAGTTGGTGAGGTTTACGGTGAGGAAGAAGGATTGCAGGGTGAGTTTGGAGGGTACCCGAGAGGGGGTGAAAGGGCCTTTGACTATTGCTGCTGAGATTTTTGAGTTGACACCAAGTTTGGTTGTGGTGGAGGTCAAGAAAAAGGGAGGGGATAGAGCTGAATATGAGAGGTTTTGTAACAACGAATTGAAGCCAGGATTGCAGAATTTGATGATGGAGGAGTCTTCAACTTCTTCAGGCTTGTCTACACCTGAACCTTCCTTGCTACGTGGCCTTTCTGAACCTGTTTCGGATTTTTCTTCTGAAATCGGAAGCCCATGCTCTATGCCTTCCATCGAGTGA	1518	0.4914	MADVVSKAPSGANHTSHHKKDPSSLLLGRFEIGKLLGHGTFAKVYYARNMKTGEGVAIKVIDKEKILKGGLVAHIKREISILRRVRHPNIVQLFEVMATKSKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLISAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDQIRQDGLFHTFCGTPAYVAPEVLARKGYDGAKVDLWSCGVVLFVLMAGYLPFHDQNVMAMYKKIYRGEFRCPRWFSPDLSRLLTRLLDTKPETRIAIPEIMENKWFKKGFKQIKFYVEDDRLCNVDDDVLLDNDDDVASVASFSDYSVSESDTEVEVRRKNGPLPRPPSLNAFDIISFSPGFNLSGLFEEKEDETRFVTAAPVNRIISKLEEIAQLVRFTVRKKDCRVSLEGTREGVKGPLTIAAEIFELTPSLVVVEVKKKGGDRAEYERFCNNELKPGLQNLMMEESSTSSGLSTPEPSLLRGLSEPVSDFSSEIGSPCSMPSIE	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02639	505	MobiDBLite	consensus disorder prediction	490	505	-	-
	Viun6g02639	505	Pfam	Protein kinase domain	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02639	505	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Viun6g02639	505	ProSiteProfiles	NAF domain profile.	343	367	IPR018451	GO:0007165
	Viun6g02639	505	Pfam	NAF domain	345	401	IPR004041	GO:0007165
	Viun6g02639	505	CDD	STKc_SnRK3	29	283	-	-
	Viun6g02639	505	SMART	serkin_6	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02639	505	MobiDBLite	consensus disorder prediction	465	505	-	-
	Viun6g02639	505	ProSitePatterns	Protein kinases ATP-binding region signature.	36	59	IPR017441	GO:0005524
	Viun6g02639	505	FunFam	Non-specific serine/threonine protein kinase	345	463	-	-
	Viun6g02639	505	Gene3D	Kinase associated domain 1, KA1	343	464	-	-
	Viun6g02639	505	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	18	457	-	-
	Viun6g02639	505	FunFam	Non-specific serine/threonine protein kinase	19	337	-	-
	Viun6g02639	505	MobiDBLite	consensus disorder prediction	1	22	-	-
	Viun6g02639	505	SUPERFAMILY	Protein kinase-like (PK-like)	26	285	IPR011009	-
	Viun6g02639	505	FunFam	Non-specific serine/threonine protein kinase	22	109	-	-
	Viun6g02639	505	Gene3D	Transferase(Phosphotransferase) domain 1	21	337	-	-
	Viun6g02639	505	CDD	CIPK_C	349	460	-	-
	Viun6g02639	505	ProSiteProfiles	Protein kinase domain profile.	30	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02639	Viun-Chr6	30761155	30763280	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02639	18	466	CBL-interacting serine-threonine protein kinases	AT4G18700	81.111	0.0	756

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Viun6g02639		Pkinase	7.2e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02639	-		-	gmx:100814720	865.914