Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02619 ATGGGAGCAGTGAATGATGCAAACCGCAGCAGAAAGAAGTCATCATCAAGAGGGCACCACAGGTTCGTGGGGGTTCGACAAAGGCCATCAGGGAGATGGGTGGCGGAGATCAAAGACTCTCTACAGAAGGTCAGGCTTTGGCTTGGAACATTTGACACTGCTGAGGATGCAGCTAGGGCATATGACAATGCTGCTCGAGCCTTGAGAGGTGCCAATGCAAGAACCAACTTTGAATTGGCTGAAGCAACTTCTGGTGATGCTTCTAAGCGTGGTGATGGCGGTGGTTCAAGCTTTGTGCCCAATTGCTCTGAACCCTTTTCTTTTGAGGATGCAAATGAGCCAGGTGAAGAAGCTGAAGGCCTTCTGGGTGCACTTAAGGCCAAACTGCTTGATAGAAAGAAAGGGAAGTTTCACTTTCCATTTCTTCCTAATAGTGCTGCTTCCCCGCTTGTTCAATCTGGCTTGGTTTCAACTCAGAATATTTGTTCCGCGGAGAAAGATTTATCATTACCATCATCAGTTAATAATACTGTCCTCTCAAGTATGAACGGAAGTGGAGCCAACCCTTTAGTTGGTGTTACGAGTACTTTAGCAACATCAAACACTTGTTGTCCTAAGAGTGTGGTTATCCCAAATCATGATCACGAAGGTTCTTCTAGAGTCGAATCTCATCAACTTTGTGAAACCCCACCTGAGGCAACATGGTTCAATGAAGTGGCATATGAATTGCCTTGGCCTACACAATTTATGAGCCAAGTTCCTGATAATAATAGCCTTCTTGCATCTGCAGCATGGCCACTTTCTGGGGTGATTGAGTCCAATATTGATATGGCATGCCCAGATCAAGGGTCATCAAGTTGCAACAAAAGTGGCCAAATGATGAATATGGTGAGCATGCAGTTACCTCTAGTTGGTGGTGGTGGTGCAACTGAAGGGCTTTGGACATTGGAACAGCAACAATTTGTGCAATGTGAGAACAACGGTTGGTTTAGTTATAATGGCTCTTGGGATCCTCTCCTATATGTTCCCTCTGAGCTAGCTTGA 1044 0.4559 MGAVNDANRSRKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDNAARALRGANARTNFELAEATSGDASKRGDGGGSSFVPNCSEPFSFEDANEPGEEAEGLLGALKAKLLDRKKGKFHFPFLPNSAASPLVQSGLVSTQNICSAEKDLSLPSSVNNTVLSSMNGSGANPLVGVTSTLATSNTCCPKSVVIPNHDHEGSSRVESHQLCETPPEATWFNEVAYELPWPTQFMSQVPDNNSLLASAAWPLSGVIESNIDMACPDQGSSSCNKSGQMMNMVSMQLPLVGGGGATEGLWTLEQQQFVQCENNGWFSYNGSWDPLLYVPSELA 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02619 347 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 17 157 - -
Viun6g02619 347 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Viun6g02619 347 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Viun6g02619 347 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Viun6g02619 347 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Viun6g02619 347 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Viun6g02619 347 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Viun6g02619 347 SUPERFAMILY DNA-binding domain 22 78 IPR016177 GO:0003677
Viun6g02619 347 MobiDBLite consensus disorder prediction 1 25 - -
Viun6g02619 347 Pfam AP2 domain 21 70 IPR001471 GO:0003700|GO:0006355
Viun6g02619 347 FunFam ethylene-responsive transcription factor RAP2-11 20 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02619 Viun-Chr6 30675842 30677300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02619 9 77 AP2-EREBP Transcription Factor Family AT5G19790 67.143 1.29e-26 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun6g02619 AP2 3.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02619 - - gmx:102661478 479.559