LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g02588	ATGGGAGTTGCCAATTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCGCTTGCTGAGAGTTTCTGCATCAAAATTACCCCAAGAAGAAGTTGATGCCCTTAGAGAAATTACGAGTGCGATGGGGTCGGCATATTGGAAATTTGATGCTGATTCCTGCAGTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAAGCAGAGAGAAGCATTGGTTGTAACTGCAGTTTTGAAGACAACACTGTCTGTCATGTTGTGACGATGACTCTCAAGCGCCTAAGCCTACCTGGCACTCTCCCACCTCAACTGGCCAAGCTACCTTTTCTCCGAGAAGTAGACTTTGCTTACAATTGCTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAACTTCAATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACAGCTCTTACATATCTGATGCTTGAAGCAAACCAGTTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGACTACAAAATTTGACTGACTTTAGAATAAATGATAACAATTTTACTGGAACAATACCTAGTTTCATACAGAGCTGGCAACTTCTTCAAAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCCTCCCATCAAATATCTCTCTCTTGAAGAACTTGGTTATGCTAAGAATCAGTGATATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGGCTATATTGATTCTAAGGAGTTGTAACTTATCTGGTGTTATACCTTCATACGTATGGACAATGAGGAATTTGGCGATTTTGGATGTCAGTTTCAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATCTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTCACTTGGCAAGACTATGAGCAACCTGCTTGTCAGGATGGCATTAGGAACTTGAATCTGAATTTGTTCAGAAGCTCGATTCTGAAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAATTTCAGCTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAGAGATGATAGAGGAGAAAACCTTTATGCGGGAGACGAAAATGTTCAGGGTGGCACTGCAACTTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACCGGGGACTTCATGGATGATTTTGAGGCCCAGAACGTGCGTTACACTGTATCTCTTCCATCTTCAAATATGCCAGAATTATATAAAACGGCTCGTGTATCTCCAATTACGCTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTGAACCTTCACTTTGCTGAGATACAGTTTACAAATGATAAAACATATAAAAGTCTTGGCAAGCGCATATTTGATATTTATGTACAGGGAAGAATCACTCACAAGAATTTCAATATAGAGAATGAAACAAATGTTGCTGAAAAACCACTGGTACTGCCTATACACAATATCAGCATCACAAATAATGTCTTGGAGATCAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCTCTTGTATCAGCTATATCTGTGATTTCAGATTCTAGAGTTTGCTCAACCGGAAAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTATTTATATCTGGACTCATATGGTGGAAGTGGAAAAGCTTTGTCAGAGGGAAACGGCGACAGAAAGAAGATGCAAAAGATGGAGATATGCAGTCAGGTAATTTTAGCTTGGAGAATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATTGGAGAAGGAGGTTTTGGTCCCGTATACAAGGGCCAATTAGTAGATGGTACTTTTATAGCGGTAAAGCAATTGTCATCAAAATCAAGACAGGGAAATCGTGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATATTGTGCGGAAGGGGAACAACTTTTGTTGGTATATGAGTACATGGAAAATAACAGCCTGGCCAGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGCTGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAGACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCTATCTTACATACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGTATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTTTGGATTGGTAA	2670	0.4041	MGVANFFVFLFIALSCFRLLRVSASKLPQEEVDALREITSAMGSAYWKFDADSCSIEMVGLTQEPPAEAERSIGCNCSFEDNTVCHVVTMTLKRLSLPGTLPPQLAKLPFLREVDFAYNCFTGSIPEEWASMKLTSISLLVNRLSGEIPKHLGNFTALTYLMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNNFTGTIPSFIQSWQLLQRLEMHASGLEGPLPSNISLLKNLVMLRISDIESPAQVFPHLENMANLAILILRSCNLSGVIPSYVWTMRNLAILDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGIRNLNLNLFRSSILKNKLEEYVPCSKNFSCSRFSSCLHVNCGGKDVRVRDDRGENLYAGDENVQGGTATYFYSDDDHWGFSSTGDFMDDFEAQNVRYTVSLPSSNMPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDKTYKSLGKRIFDIYVQGRITHKNFNIENETNVAEKPLVLPIHNISITNNVLEIRFYWAGKGTTRIPDVGVYGPLVSAISVISDSRVCSTGKKKVAVSIIIAIVAGAVCLVLFISGLIWWKWKSFVRGKRRQKEDAKDGDMQSGNFSLENIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDADLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEIVSGKSNNNYLPDDGSACLLDW	889

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g02588	889	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED	14	889	-	-
	Viun6g02588	889	Pfam	Protein tyrosine and serine/threonine kinase	676	873	IPR001245	GO:0004672\|GO:0006468
	Viun6g02588	889	SUPERFAMILY	Protein kinase-like (PK-like)	659	874	IPR011009	-
	Viun6g02588	889	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	795	807	IPR008271	GO:0004672\|GO:0006468
	Viun6g02588	889	Gene3D	Ribonuclease Inhibitor	34	197	IPR032675	-
	Viun6g02588	889	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	33	196	-	-
	Viun6g02588	889	Gene3D	Phosphorylase Kinase; domain 1	637	748	-	-
	Viun6g02588	889	FunFam	Putative LRR receptor-like serine/threonine-protein kinase isoform A	197	263	-	-
	Viun6g02588	889	Gene3D	Transferase(Phosphotransferase) domain 1	749	889	-	-
	Viun6g02588	889	FunFam	probable LRR receptor-like serine/threonine-protein kinase At1g53430	642	748	-	-
	Viun6g02588	889	FunFam	Putative leucine-rich repeat receptor-like serine/threonine-protein kinase	404	599	-	-
	Viun6g02588	889	FunFam	Probable LRR receptor-like serine/threonine-protein kinase RFK1	265	387	-	-
	Viun6g02588	889	FunFam	Os07g0541700 protein	749	838	-	-
	Viun6g02588	889	Pfam	Malectin domain	406	594	IPR021720	-
	Viun6g02588	889	ProSiteProfiles	Protein kinase domain profile.	673	889	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02588	889	Gene3D	-	404	601	-	-
	Viun6g02588	889	SMART	serkin_6	673	886	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Viun6g02588	889	SUPERFAMILY	L domain-like	83	341	-	-
	Viun6g02588	889	Gene3D	Ribonuclease Inhibitor	198	395	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g02588	Viun-Chr6	30440567	30448061	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g02588	5	839	Receptor kinase-like Gene Family	AT1G29750	59.162	0.0	1027

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Viun6g02588		PK_Tyr_Ser-Thr	1e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g02588	-		-	qlo:115990047	1239.17