Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02587 ATGACCAATTTAAACAAAGACTTTGCTTACAATTGCTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAACTTCAATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACAGCTCTTACATATCTGATGCTTGAAGCAAACCAGTTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGACTACAAAATTTGACTGACTTTAGAATAAATGATAACAATTTTACTGGAACAATACCTAGTTTCATACAGAGCTGGCAACTTCTTCAAAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCCTCCCATCAAATATCTCTCTCTTGAAGAACTTGGTTATGCTAAGAATCAGTGATATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGGCTATATTGATTCTAAGGAGTTGTAACTTATCTGGTGTTATACCTTCATACGTATGGACAATGAGGAATTTGGCGATTTTGGATGTCAGTTTCAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATCTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTCACTTGGCAAGACTATGAGCAACCTGCTTGTCAGGATGGCATTAGGAACTTGAATCTGAATTTGTTCAGAAGCTCGATTCTGAAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAATTTCAGCTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAGAGATGATAGAGGAGAAAACCTTTATGCGGGAGACGAAAATGTTCAGGGTGGCACTGCAACTTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACCGGGGACTTCATGGATGATTTTGAGGCCCAGAACGTGCGTTACACTGTATCTCTTCCATCTTCAAATATGCCAGAATTATATAAAACGGCTCGTGTATCTCCAATTACGCTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTGAACCTTCACTTTGCTGAGATACAGTTTACAAATGATAAAACATATAAAAGTCTTGGCAAGCGCATATTTGATATTTATGTACAGGGAAGAATCACTCACAAGAATTTCAATATAGAGAATGAAACAAATGTTGCTGAAAAACCACTGGTACTGCCTATACACAATATCAGCATCACAAATAATGTCTTGGAGATCAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCTCTTGTATCAGCTATATCTGTGATTTCAGATTCTAGAGTTTGCTCAACCGGAAAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTATTTATATCTGGACTCATATGGTGGAAGTGGAAAAGCTTTGTCAGAGGGAAACGGCGACAGAAAGAAGATGCAAAAGATGGAGATATGCAGTCAGGTAATTTTAGCTTGGAGAATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATTGGAGAAGGAGGTTTTGGTCCCGTATACAAGGGCCAATTAGTAGATGGTACTTTTATAGCGGTAAAGCAATTGTCATCAAAATCAAGACAGGGAAATCGTGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATATTGTGCGGAAGGGGAACAACTTTTGTTGGTATATGAGTACATGGAAAATAACAGCCTGGCCAGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGCTGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAGACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCTATCTTACATACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGTATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTTTGGATTGGGCATGTAAGTTAAATCAAGCTAAGAAATTAGAGGGGCTTGTTGATGAAAGGTTGGAGCAAGAGCTTAATGAAACGGAAGTAGAAAAGGTGGTTAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAAAATGTTTGAAGGAGAATTAGATATTCCTGATGCAATCCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAAGCCTTAAGGGACCTCAATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGACTCATATATTCAGCTCAGCCTCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAGTTGACAATAGTTAG 2718 0.397 MTNLNKDFAYNCFTGSIPEEWASMKLTSISLLVNRLSGEIPKHLGNFTALTYLMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNNFTGTIPSFIQSWQLLQRLEMHASGLEGPLPSNISLLKNLVMLRISDIESPAQVFPHLENMANLAILILRSCNLSGVIPSYVWTMRNLAILDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGIRNLNLNLFRSSILKNKLEEYVPCSKNFSCSRFSSCLHVNCGGKDVRVRDDRGENLYAGDENVQGGTATYFYSDDDHWGFSSTGDFMDDFEAQNVRYTVSLPSSNMPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDKTYKSLGKRIFDIYVQGRITHKNFNIENETNVAEKPLVLPIHNISITNNVLEIRFYWAGKGTTRIPDVGVYGPLVSAISVISDSRVCSTGKKKVAVSIIIAIVAGAVCLVLFISGLIWWKWKSFVRGKRRQKEDAKDGDMQSGNFSLENIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDADLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEIVSGKSNNNYLPDDGSACLLDWACKLNQAKKLEGLVDERLEQELNETEVEKVVRIALLCTNASVSLRPTMSEVVKMFEGELDIPDAIPEPSTYSEDLRFKALRDLNQHRSKQSLSGNSSTHIFSSASGGNTHTSSNIEDHCSVDNS 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02587 905 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 89 155 - -
Viun6g02587 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Viun6g02587 905 SUPERFAMILY L domain-like 9 254 - -
Viun6g02587 905 Gene3D Ribonuclease Inhibitor 155 261 IPR032675 -
Viun6g02587 905 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 296 491 - -
Viun6g02587 905 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 5 871 - -
Viun6g02587 905 FunFam Putative LRR receptor-like serine/threonine-protein kinase 641 848 - -
Viun6g02587 905 Gene3D - 296 493 - -
Viun6g02587 905 MobiDBLite consensus disorder prediction 869 905 - -
Viun6g02587 905 SMART serkin_6 565 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02587 905 ProSiteProfiles Protein kinase domain profile. 565 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02587 905 Pfam Protein tyrosine and serine/threonine kinase 568 835 IPR001245 GO:0004672|GO:0006468
Viun6g02587 905 Gene3D Transferase(Phosphotransferase) domain 1 641 842 - -
Viun6g02587 905 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 88 - -
Viun6g02587 905 Pfam Malectin domain 298 486 IPR021720 -
Viun6g02587 905 SUPERFAMILY Protein kinase-like (PK-like) 549 856 IPR011009 -
Viun6g02587 905 Gene3D Phosphorylase Kinase; domain 1 529 640 - -
Viun6g02587 905 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 157 279 - -
Viun6g02587 905 CDD STKc_IRAK 571 838 - -
Viun6g02587 905 Gene3D Ribonuclease Inhibitor 89 154 IPR032675 -
Viun6g02587 905 Gene3D Ribonuclease Inhibitor 2 88 IPR032675 -
Viun6g02587 905 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 534 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02587 Viun-Chr6 30440089 30447131 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02587 7 731 Receptor kinase-like Gene Family AT1G29750 60.000 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02587 PK_Tyr_Ser-Thr 8.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02587 - - qlo:115990047 1226.85