Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02586 ATGGGAGTTGCCAATTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCGCTTGCTGAGAGTTTCTGCATCAAAATTACCCCAAGAAGAAGTTGATGCCCTTAGAGAAATTACGAGTGCGATGGGGTCGGCATATTGGAAATTTGATGCTGATTCCTGCAGTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAAGCAGAGAGAAGCATTGGTTGTAACTGCAGTTTTGAAGACAACACTGTCTGTCATGTTGTGACGATGACTCTCAAGCGCCTAAGCCTACCTGGCACTCTCCCACCTCAACTGGCCAAGCTACCTTTTCTCCGAGAAGTAGACTTTGCTTACAATTGCTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAACTTCAATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACAGCTCTTACATATCTGATGCTTGAAGCAAACCAGTTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGACTACAAAATTTGACTGACTTTAGAATAAATGATAACAATTTTACTGGAACAATACCTAGTTTCATACAGAGCTGGCAACTTCTTCAAAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCCTCCCATCAAATATCTCTCTCTTGAAGAACTTGGTTATGCTAAGAATCAGTGATATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGGCTATATTGATTCTAAGGAGTTGTAACTTATCTGGTGTTATACCTTCATACGTATGGACAATGAGGAATTTGGCGATTTTGGATGTCAGTTTCAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATCTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTCACTTGGCAAGACTATGAGCAACCTGCTTGTCAGGATGGCATTAGGAACTTGAATCTGAATTTGTTCAGAAGCTCGATTCTGAAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAATTTCAGCTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAGAGATGATAGAGGAGAAAACCTTTATGCGGGAGACGAAAATGTTCAGGGTGGCACTGCAACTTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACCGGGGACTTCATGGATGATTTTGAGGCCCAGAACGTGCGTTACACTGTATCTCTTCCATCTTCAAATATGCCAGAATTATATAAAACGGCTCGTGTATCTCCAATTACGCTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTGAACCTTCACTTTGCTGAGATACAGTTTACAAATGATAAAACATATAAAAGTCTTGGCAAGCGCATATTTGATATTTATGTACAGGGAAGAATCACTCACAAGAATTTCAATATAGAGAATGAAACAAATGTTGCTGAAAAACCACTGGTACTGCCTATACACAATATCAGCATCACAAATAATGTCTTGGAGATCAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCTCTTGTATCAGCTATATCTGTGATTTCAGATTCTAGAGTTTGCTCAACCGGAAAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTATTTATATCTGGACTCATATGGTGGAAGTGGAAAAGCTTTGTCAGAGGGAAACGGCGACAGAAAGAAGATGCAAAAGATGGAGATATGCAGTCAGGTAATTTTAGCTTGGAGAATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATTGGAGAAGGAGGTTTTGGTCCCGTATACAAGGGCCAATTAGTAGATGGTACTTTTATAGCGGTAAAGCAATTGTCATCAAAATCAAGACAGGGAAATCGTGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATATTGTGCGGAAGGGGAACAACTTTTGTTGGTATATGAGTACATGGAAAATAACAGCCTGGCCAGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGCTGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAGACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCTATCTTACATACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGTATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTTTGGATTGGGCATGTAAGTTAAATCAAGCTAAGAAATTAGAGGGGCTTGTTGATGAAAGGTTGGAGCAAGAGCTTAATGAAACGGAAGTAGAAAAGGTGGTTAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAAAATGTTTGAAGGAGAATTAGATATTCCTGATGCAATCCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAAGCCTTAAGGGACCTCAATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGACTCATATATTCAGCTCAGCCTCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAGTTGACAATAGTTAG 3042 0.4043 MGVANFFVFLFIALSCFRLLRVSASKLPQEEVDALREITSAMGSAYWKFDADSCSIEMVGLTQEPPAEAERSIGCNCSFEDNTVCHVVTMTLKRLSLPGTLPPQLAKLPFLREVDFAYNCFTGSIPEEWASMKLTSISLLVNRLSGEIPKHLGNFTALTYLMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNNFTGTIPSFIQSWQLLQRLEMHASGLEGPLPSNISLLKNLVMLRISDIESPAQVFPHLENMANLAILILRSCNLSGVIPSYVWTMRNLAILDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGIRNLNLNLFRSSILKNKLEEYVPCSKNFSCSRFSSCLHVNCGGKDVRVRDDRGENLYAGDENVQGGTATYFYSDDDHWGFSSTGDFMDDFEAQNVRYTVSLPSSNMPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDKTYKSLGKRIFDIYVQGRITHKNFNIENETNVAEKPLVLPIHNISITNNVLEIRFYWAGKGTTRIPDVGVYGPLVSAISVISDSRVCSTGKKKVAVSIIIAIVAGAVCLVLFISGLIWWKWKSFVRGKRRQKEDAKDGDMQSGNFSLENIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDADLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEIVSGKSNNNYLPDDGSACLLDWACKLNQAKKLEGLVDERLEQELNETEVEKVVRIALLCTNASVSLRPTMSEVVKMFEGELDIPDAIPEPSTYSEDLRFKALRDLNQHRSKQSLSGNSSTHIFSSASGGNTHTSSNIEDHCSVDNS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02586 1013 Pfam Protein tyrosine and serine/threonine kinase 676 943 IPR001245 GO:0004672|GO:0006468
Viun6g02586 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 795 807 IPR008271 GO:0004672|GO:0006468
Viun6g02586 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
Viun6g02586 1013 Gene3D Phosphorylase Kinase; domain 1 637 748 - -
Viun6g02586 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Viun6g02586 1013 CDD STKc_IRAK 679 946 - -
Viun6g02586 1013 SUPERFAMILY L domain-like 83 341 - -
Viun6g02586 1013 Gene3D - 404 601 - -
Viun6g02586 1013 Gene3D Ribonuclease Inhibitor 39 194 IPR032675 -
Viun6g02586 1013 Gene3D Ribonuclease Inhibitor 195 395 IPR032675 -
Viun6g02586 1013 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 404 599 - -
Viun6g02586 1013 Pfam Malectin domain 406 594 IPR021720 -
Viun6g02586 1013 ProSiteProfiles Protein kinase domain profile. 673 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02586 1013 Gene3D Transferase(Phosphotransferase) domain 1 749 950 - -
Viun6g02586 1013 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 642 748 - -
Viun6g02586 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 979 - -
Viun6g02586 1013 SMART serkin_6 673 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02586 1013 MobiDBLite consensus disorder prediction 977 1013 - -
Viun6g02586 1013 FunFam Putative LRR receptor-like serine/threonine-protein kinase 749 956 - -
Viun6g02586 1013 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 387 - -
Viun6g02586 1013 SUPERFAMILY Protein kinase-like (PK-like) 657 964 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02586 Viun-Chr6 30440089 30448057 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02586 5 839 Receptor kinase-like Gene Family AT1G29750 59.162 0.0 1030
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02586 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02586 - - tcc:18596614 1354.35