Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02585 ATGGGAGTTGCCAATTTCTTTGTCTTCCTTTTTATTGCTCTAAGTTGCTTCCGCTTGCTGAGAGTTTCTGCATCAAAATTACCCCAAGAAGAAGTTGATGCCCTTAGAGAAATTACGAGTGCGATGGGGTCGGCATATTGGAAATTTGATGCTGATTCCTGCAGTATTGAAATGGTTGGACTAACGCAAGAACCACCAGCTGAAGCAGAGAGAAGCATTGGTTGTAACTGCAGTTTTGAAGACAACACTGTCTGTCATGTTGTGACGATGACTCTCAAGCGCCTAAGCCTACCTGGCACTCTCCCACCTCAACTGGCCAAGCTACCTTTTCTCCGAGAAGTAGACTTTGCTTACAATTGCTTCACCGGTTCAATTCCAGAGGAATGGGCTTCAATGAAATTAACTTCAATTTCTCTTCTTGTGAATCGCTTATCTGGGGAAATTCCAAAGCATCTAGGAAATTTTACAGCTCTTACATATCTGATGCTTGAAGCAAACCAGTTTTCTGGTGCTGTTCCACCTGAGCTTGGGAAACTAATCAACTTGCAGACCTTGGTTCTGTCATCCAATCAATTGACTGGGAACTTACCACTTACACTTGCTGGACTACAAAATTTGACTGACTTTAGAATAAATGATAACAATTTTACTGGAACAATACCTAGTTTCATACAGAGCTGGCAACTTCTTCAAAGACTAGAAATGCATGCAAGTGGACTAGAGGGACCCCTCCCATCAAATATCTCTCTCTTGAAGAACTTGGTTATGCTAAGAATCAGTGATATAGAAAGTCCTGCGCAGGTCTTTCCTCATCTGGAAAACATGGCAAACTTGGCTATATTGATTCTAAGGAGTTGTAACTTATCTGGTGTTATACCTTCATACGTATGGACAATGAGGAATTTGGCGATTTTGGATGTCAGTTTCAACATGCTCGTTGGGGGAATTTCATCAATTATAAGTGCAAGGCGTCTAAGATTTATCTACCTAACAGGTAATATGCTTAGTGGCAATATACCGAATTCAGTCCTGAAGGATGGAAGTAGCATTGATCTATCATACAACAACTTCACTTGGCAAGACTATGAGCAACCTGCTTGTCAGGATGGCATGAACTTGAATCTGAATTTGTTCAGAAGCTCGATTCTGAAGAATAAGTTAGAGGAGTATGTTCCTTGCTCCAAGAATTTCAGCTGTTCACGGTTTTCAAGTTGTTTACATGTTAACTGTGGTGGGAAGGATGTAAGGGTAAGAGATGATAGAGGAGAAAACCTTTATGCGGGAGACGAAAATGTTCAGGGTGGCACTGCAACTTATTTCTACAGTGATGATGATCACTGGGGATTTAGTAGCACCGGGGACTTCATGGATGATTTTGAGGCCCAGAACGTGCGTTACACTGTATCTCTTCCATCTTCAAATATGCCAGAATTATATAAAACGGCTCGTGTATCTCCAATTACGCTTACTTATTTCCACAACTGCATGCAAAATGGGAACTATACTGTGAACCTTCACTTTGCTGAGATACAGTTTACAAATGATAAAACATATAAAAGTCTTGGCAAGCGCATATTTGATATTTATGTACAGGGAAGAATCACTCACAAGAATTTCAATATAGAGAATGAAACAAATGTTGCTGAAAAACCACTGGTACTGCCTATACACAATATCAGCATCACAAATAATGTCTTGGAGATCAGATTCTACTGGGCTGGAAAAGGAACGACTAGAATTCCTGATGTTGGAGTTTATGGCCCTCTTGTATCAGCTATATCTGTGATTTCAGATTCTAGAGTTTGCTCAACCGGAAAAAAGAAAGTTGCTGTTTCGATAATCATTGCCATTGTAGCCGGTGCTGTATGCTTAGTGCTATTTATATCTGGACTCATATGGTGGAAGTGGAAAAGCTTTGTCAGAGGGAAACGGCGACAGAAAGAAGATGCAAAAGATGGAGATATGCAGTCAGGTAATTTTAGCTTGGAGAATATCAGAGCTGCCACCAATGACTTCTCTTCTGCTAATAAGATTGGAGAAGGAGGTTTTGGTCCCGTATACAAGGGCCAATTAGTAGATGGTACTTTTATAGCGGTAAAGCAATTGTCATCAAAATCAAGACAGGGAAATCGTGAATTCATAAATGAAATAGGGTTGATATCTTGTGTGCAACACCCCAACCTCGTAAAGCTTCATGGATATTGTGCGGAAGGGGAACAACTTTTGTTGGTATATGAGTACATGGAAAATAACAGCCTGGCCAGAGCTTTATTTGGTAGTGAGAACCAACAGCTTAAATTGGATTGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCGAAAGGTCTAGCATTTCTCCATGATGAGTCAAGATTCAAGATAGTGCACAGAGATATCAAGGCTTCTAATGTGTTACTCGATGCTGATTTGAATCCAAAAATATCTGACTTTGGCTTGGCTAGGCTTGATGAAACAGAGAAGACCCATATCAGCACCCGAGTTGCTGGGACTATAGGATATATGGCACCAGAATATGCATTATGGGGCTATCTTACATACAAGGCCGATGTTTACAGTTTTGGAGTTGTAGTATTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGCTTGTCTTTTGGATTGGGCATGTAAGTTAAATCAAGCTAAGAAATTAGAGGGGCTTGTTGATGAAAGGTTGGAGCAAGAGCTTAATGAAACGGAAGTAGAAAAGGTGGTTAGAATTGCTCTCCTGTGCACAAATGCTTCTGTATCTCTTAGGCCTACGATGTCTGAGGTGGTGAAAATGTTTGAAGGAGAATTAGATATTCCTGATGCAATCCCAGAACCAAGTACCTACAGTGAGGATTTAAGGTTCAAAGCCTTAAGGGACCTCAATCAACATCGATCAAAGCAGAGTTTGAGTGGTAATTCATCGACTCATATATTCAGCTCAGCCTCTGGTGGTAATACTCACACTAGCAGTAATATTGAGGATCATTGTTCAGTTGACAATAGTTAG 3039 0.4044 MGVANFFVFLFIALSCFRLLRVSASKLPQEEVDALREITSAMGSAYWKFDADSCSIEMVGLTQEPPAEAERSIGCNCSFEDNTVCHVVTMTLKRLSLPGTLPPQLAKLPFLREVDFAYNCFTGSIPEEWASMKLTSISLLVNRLSGEIPKHLGNFTALTYLMLEANQFSGAVPPELGKLINLQTLVLSSNQLTGNLPLTLAGLQNLTDFRINDNNFTGTIPSFIQSWQLLQRLEMHASGLEGPLPSNISLLKNLVMLRISDIESPAQVFPHLENMANLAILILRSCNLSGVIPSYVWTMRNLAILDVSFNMLVGGISSIISARRLRFIYLTGNMLSGNIPNSVLKDGSSIDLSYNNFTWQDYEQPACQDGMNLNLNLFRSSILKNKLEEYVPCSKNFSCSRFSSCLHVNCGGKDVRVRDDRGENLYAGDENVQGGTATYFYSDDDHWGFSSTGDFMDDFEAQNVRYTVSLPSSNMPELYKTARVSPITLTYFHNCMQNGNYTVNLHFAEIQFTNDKTYKSLGKRIFDIYVQGRITHKNFNIENETNVAEKPLVLPIHNISITNNVLEIRFYWAGKGTTRIPDVGVYGPLVSAISVISDSRVCSTGKKKVAVSIIIAIVAGAVCLVLFISGLIWWKWKSFVRGKRRQKEDAKDGDMQSGNFSLENIRAATNDFSSANKIGEGGFGPVYKGQLVDGTFIAVKQLSSKSRQGNREFINEIGLISCVQHPNLVKLHGYCAEGEQLLLVYEYMENNSLARALFGSENQQLKLDWPTRFRICIGIAKGLAFLHDESRFKIVHRDIKASNVLLDADLNPKISDFGLARLDETEKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEIVSGKSNNNYLPDDGSACLLDWACKLNQAKKLEGLVDERLEQELNETEVEKVVRIALLCTNASVSLRPTMSEVVKMFEGELDIPDAIPEPSTYSEDLRFKALRDLNQHRSKQSLSGNSSTHIFSSASGGNTHTSSNIEDHCSVDNS 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02585 1012 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 598 - -
Viun6g02585 1012 Gene3D Phosphorylase Kinase; domain 1 636 747 - -
Viun6g02585 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
Viun6g02585 1012 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Viun6g02585 1012 SUPERFAMILY Protein kinase-like (PK-like) 656 963 IPR011009 -
Viun6g02585 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 747 - -
Viun6g02585 1012 Gene3D - 403 600 - -
Viun6g02585 1012 MobiDBLite consensus disorder prediction 976 1012 - -
Viun6g02585 1012 Pfam Protein tyrosine and serine/threonine kinase 675 942 IPR001245 GO:0004672|GO:0006468
Viun6g02585 1012 CDD STKc_IRAK 678 945 - -
Viun6g02585 1012 Pfam Malectin domain 405 593 IPR021720 -
Viun6g02585 1012 Gene3D Transferase(Phosphotransferase) domain 1 748 949 - -
Viun6g02585 1012 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 386 - -
Viun6g02585 1012 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 978 - -
Viun6g02585 1012 SUPERFAMILY L domain-like 83 341 - -
Viun6g02585 1012 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Viun6g02585 1012 FunFam Putative LRR receptor-like serine/threonine-protein kinase 748 955 - -
Viun6g02585 1012 ProSiteProfiles Protein kinase domain profile. 672 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02585 1012 Gene3D Ribonuclease Inhibitor 265 378 IPR032675 -
Viun6g02585 1012 Gene3D Ribonuclease Inhibitor 196 264 IPR032675 -
Viun6g02585 1012 Gene3D Ribonuclease Inhibitor 39 195 IPR032675 -
Viun6g02585 1012 SMART serkin_6 672 943 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02585 Viun-Chr6 30440089 30448057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02585 5 838 Receptor kinase-like Gene Family AT1G29750 59.353 0.0 1036
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Viun6g02585 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02585 - - tcc:18596614 1360.51