Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02576 ATGGCTTTTCCAAACCCATCCATGTCATCAGTTTCTCCGCAGAGGAAGATGGGAAGGGGGAAGATTGAGATCAAGCGGATTGAGAACACCACCAATCGCCAAGTCACTTTCTGCAAGCGCAGAAACGGCTTGCTCAAGAAAGCATATGAATTATCTGTGCTTTGTGATGCAGAGGTTGCTCTAATCGTCTTCTCTAGCCGTGGCCGTCTCTATGAATATGCTAATAACAGTGTCAAAGCAACTATTGAGAGGTACAAAAAAGCATGTTCAGATTCGTCTGGTGCTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAAGCAGATAAACTTCGTGCACAAATAAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAGTCTTTGGGTTCTATGACTGCCAAGGATCTCAAAAACCTGGAGAGTAAACTAGAAAAAGGAATTAGTAGGATTCGTTCAAAAAAGAACGAGCTGCTATTTGCTGAAATTGAGTACATGCAGAAGAGGGAGATAGACTTGCACAACAACAACCAGCTTCTTAGAGCAAAGATAGCTGAAAGTGAGAGGAGCCACAATATGGGTGTGTTGGCTGGAGGCACAAGCTATGAGTCTATGCAGTCTCAGCAGCCATTTGACTCTCGTGGCTACTTCCAAGTCACTGGATTACAACCCAATAATCAGTATGCCCGACAAGATCAGATGTCTCTTCAATTAGTGTAA 729 0.4376 MAFPNPSMSSVSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSGAGSASEANAQFYQQEADKLRAQISNLQNNNRQMMGESLGSMTAKDLKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERSHNMGVLAGGTSYESMQSQQPFDSRGYFQVTGLQPNNQYARQDQMSLQLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02576 242 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Viun6g02576 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 197 - -
Viun6g02576 242 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g02576 242 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Viun6g02576 242 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Viun6g02576 242 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Viun6g02576 242 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Viun6g02576 242 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Viun6g02576 242 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g02576 242 SUPERFAMILY SRF-like 18 89 IPR036879 GO:0003677|GO:0046983
Viun6g02576 242 Coils Coil 140 160 - -
Viun6g02576 242 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Viun6g02576 242 Coils Coil 103 130 - -
Viun6g02576 242 Gene3D - 29 95 IPR036879 GO:0003677|GO:0046983
Viun6g02576 242 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Viun6g02576 242 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun6g02576 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02576 Viun-Chr6 30358310 30366003 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02576 15 242 MADS-box Gene Family AT3G58780 67.660 1.03e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun6g02576 K-box 3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02576 K09264 - gmx:732595 427.172