Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02553 ATGGCATCAGATGAAGAACACAATGCCAAAGTCCGGGAGAAGGTTCCATTTTATAAGCTATTCACTTTTGCAGATAACCTTGATAGGACTTTGATGATCATTGGTCTCATCTGTGCCATGGCTAATGGGGTGGTGCAGCCTCTCATGACCCTAATTTTTGGGAATATGATCAATGCCTTTGGCTCCACTGATCCTTCCCACATAGTTAAGGAAGTTTCCAAGGTTGTGTTATTATTTGTTTACCTGGCCTTTGGTGCTGGAATAGCCTCTTTTCTGCAGGTATCGTGTTGGATGGTGACAGGAGAAAGACAAGCCGCTAGGATCCGTGGCATGTACTTGAAAACTATATTGAAGCAAGACATTACCTTTTTTGACACTGAAACAAGTGGTGAGGTAATTGGAAGAATTTCAGGTGACACCATTCTCATTCAAGAGGCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTCGTTACATCCTTTATTGCTGCCTTTATAATTGCCTTCACAAGAGGATGGCAACTCTCTCTAGTTCTGCTTGCATGTATTCCTTGTATTGCTATTGTCGGTGGAATTATATCCGTGATGATGGCGATAATGTCAATTCGCGGGCAAACTGCTTATGCAGAAGCTGGAAATGTTGTGAAACAAACAGTTGGAGCCATCAGAACAGTTGCCTCTTTCACCGGTGAGAAAAAAGCAGTAGAAAAGTATGATAACAAGTTAAGAATATCTTATATTACAACTGTTGAACAAGGGCTGGCTTCAGGGTTTGGAATGGGAATACTTTTGTTGATTATATTTTCCACCTATGCACTTGCCATGTGGTATGGTTCTAAACTCATCATTGAGAAAGGCTATGATGGTGGAACTGTTTTCAACATTATCATTTCAGTCAATACTGGTGCAATGGCACTTGGTCAGGCAACCCCTTGCTTGAATTCATTTGCAGCGGCTCAAGCAGCAGCATGTAAGATGTTTGAGACAATTAAACGAAAGCCAAAAATAGATGTTTATGACACCAATGGTGTTGTCTTGGAAGACATAAAGGGAGATATTGAACTCAAGGATGTTTACTTCAGATACCCTGCAAGGCCAGATGTTCAGATATTTTCCGGAATCTCATTCTGTATTCCGAGTGGCACAACTGCTGCTTTGGTGGGTCAAAGTGGAAGTGGGAAGTCAACTATAATAAGCTTATTAGAAAGATTTTATGACCCTGAAGCTGGAGAAGTTCTTATAGATGGTGTGAATTTGAAGAATTTTCAAGTTAGATGGATTAGAGAACAGATTGGACTTGTTGGTCAAGAACCTGTCCTGTTTACAGCTAGTGTTAAAGACAACATAGCATACGGGAAAGAAGGTGCAACAGATGAGGAGATAAATAAAGCAATAACTCTTGCCGATGCAAGAAAATTCATTGATAAGCTGCCTCAGGGCATTGACACGATGGTAGGAGGGCATGGGACTCAAATTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAAAATCCTTCTCCTCGATGAAGCTACTAGTGCATTAGATTCTGAGTCTGAACATATTGTTCAAGTAGCACTTGAAAAGGTTATAACCCCAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACTATTAGACACGCTGACATCATAGCAGTGGTACATAAGGGCAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCGGCTTGTTCGTCTACAAGAAGGAAATAAAGTAGCAGAAGAAGTGAGCCGTAAGTCAGAAGCAGATAAGTCAAATAACAACATTTTGAACCTAAGTCGGAGAACATCCTTTGCAAGATCGAGCAGTAGACACTCTCTCTCACTTAGTTTTGCTCTTCCTTATCAAATTCCCTTGCACGAGTCTGGAGTGGAGGATAACGGGGATGTTGAAAGTAGTGAAGTTGATGATAAGAAGCATCAAAAGGATGCTGTTAACTGTTTGGTCAAGTTGAACGAGCCAGAGGTTCCTGTCTTAGTACTAGGATCCTTTGCAGCCGCAATACATGGTCTTACTCTCCCTGTATTTGGACTCTTGCTCTCATCATCTGTTAACACGTTCTTTAAACCTCCTGATGTGCTTAGGACAGATTCTATGTTTTGGTCATTTCTATTTGTTGGTTTGGGGATTGTCGGTCTGGTGGCTATGACATTGCAAAACTACTTATTTGGGATAGCAGGTGGGAAACTTATAGAGCGAATTCGTTCAATGGCATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGCGAGAAGTCTCGTCGGTGACAACTTATCCCTCATTGTGCAAAACATAGCAACAATCACAACTGGTTTAGCTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTTATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAGAAGGATTCAGTGCAGATGCAAAGGTGAATTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGCTTGGGGCTTGTTAGTGGTGTAGGACTAGGCTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACGTAGGATCGCTTCTTGTGCAAGACGGGAAAGCAACCTTTGAAGACGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATAATCAAAATTCTTGAGACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCAAAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTAAGCTTTTGTTACCCAACAAGGCCTGACATTCAAATCTTCAAGGATTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCATAGAGAGATTTTACAACCCTGATTCTGGACGTGTGCTACTCGATGGAGTGGATATAAAAAACTTGAGACTGAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTGAAGAGCCTATTCTTTTCAATGACAGTATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCCACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATATGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGGACGAGGGACACAACTGTCAAGAGGACAAAAACAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAAAATCCTTTTGCTGGATGGGGCAACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTCAGTGTTAATAGAACTACCGTTGTGGTAGCTCACCGTCTTCCAACAATTAAAGGTGCTGACATTATAGCAGTCGTCAAAAATGGGGTCATTGCTGAGAAGGGGAACCATGAAGCGTTGATGAAGATTGATGGAGTTTATGCTTCATTGGTATCTCTGCATATTAGTCAATCATAG 3744 0.4204 MASDEEHNAKVREKVPFYKLFTFADNLDRTLMIIGLICAMANGVVQPLMTLIFGNMINAFGSTDPSHIVKEVSKVVLLFVYLAFGAGIASFLQVSCWMVTGERQAARIRGMYLKTILKQDITFFDTETSGEVIGRISGDTILIQEAMGEKVGKFIQLVTSFIAAFIIAFTRGWQLSLVLLACIPCIAIVGGIISVMMAIMSIRGQTAYAEAGNVVKQTVGAIRTVASFTGEKKAVEKYDNKLRISYITTVEQGLASGFGMGILLLIIFSTYALAMWYGSKLIIEKGYDGGTVFNIIISVNTGAMALGQATPCLNSFAAAQAAACKMFETIKRKPKIDVYDTNGVVLEDIKGDIELKDVYFRYPARPDVQIFSGISFCIPSGTTAALVGQSGSGKSTIISLLERFYDPEAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASVKDNIAYGKEGATDEEINKAITLADARKFIDKLPQGIDTMVGGHGTQISGGQKQRIAIARAILKNPKILLLDEATSALDSESEHIVQVALEKVITPRTTVVVAHRLTTIRHADIIAVVHKGKIVEKGTHDELIKDADGAYSRLVRLQEGNKVAEEVSRKSEADKSNNNILNLSRRTSFARSSSRHSLSLSFALPYQIPLHESGVEDNGDVESSEVDDKKHQKDAVNCLVKLNEPEVPVLVLGSFAAAIHGLTLPVFGLLLSSSVNTFFKPPDVLRTDSMFWSFLFVGLGIVGLVAMTLQNYLFGIAGGKLIERIRSMAFNKVVHQEISWFDHPSNSCGAVSARLATDASTARSLVGDNLSLIVQNIATITTGLAIAFTANWILAFVILAVSPLLLLQGYLQTKFVEGFSADAKVNYEEASQVANDAIGSIRTVASFCAEPKVVDMYKKKCSGPEKQGVRLGLVSGVGLGFSFLALYCTNAFCFYVGSLLVQDGKATFEDVFKVFFALTVTAVGVSQSSALAPDTNKAKDSATSIIKILETKSAIDSSSDEGKTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLIERFYNPDSGRVLLDGVDIKNLRLSWLRQQMGLVGEEPILFNDSIRANIAYSKEGGATEEEIVAAAEAANAHKFICSLPHSYDTPVGGRGTQLSRGQKQRIAIARAILKDPKILLLDGATSALDAESECVVQEALDKVSVNRTTVVVAHRLPTIKGADIIAVVKNGVIAEKGNHEALMKIDGVYASLVSLHISQS 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02553 1247 CDD ABC_MTABC3_MDL1_MDL2 353 591 - -
Viun6g02553 1247 FunFam ABC transporter B family member 1 343 592 - -
Viun6g02553 1247 SUPERFAMILY ABC transporter transmembrane region 19 337 IPR036640 GO:0005524|GO:0016020
Viun6g02553 1247 FunFam ABC transporter B family member 9 19 348 - -
Viun6g02553 1247 Pfam ABC transporter 372 520 IPR003439 GO:0005524
Viun6g02553 1247 ProSitePatterns ABC transporters family signature. 492 506 IPR017871 GO:0005524|GO:0016887
Viun6g02553 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1242 IPR003439 GO:0005524
Viun6g02553 1247 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 589 IPR003439 GO:0005524
Viun6g02553 1247 CDD ABC_6TM_Pgp_ABCB1_D1_like 32 316 - -
Viun6g02553 1247 Gene3D ABC transporter type 1, transmembrane domain 19 612 IPR036640 GO:0005524|GO:0016020
Viun6g02553 1247 Gene3D - 644 662 IPR027417 -
Viun6g02553 1247 Gene3D - 995 1243 IPR027417 -
Viun6g02553 1247 Gene3D - 343 592 IPR027417 -
Viun6g02553 1247 Pfam ABC transporter 1024 1173 IPR003439 GO:0005524
Viun6g02553 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1242 IPR027417 -
Viun6g02553 1247 SUPERFAMILY ABC transporter transmembrane region 672 984 IPR036640 GO:0005524|GO:0016020
Viun6g02553 1247 FunFam ABC transporter B family member 1 663 971 - -
Viun6g02553 1247 FunFam ABC transporter B family member 1 995 1244 - -
Viun6g02553 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 33 318 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02553 1247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 591 IPR027417 -
Viun6g02553 1247 SMART AAA_5 380 566 IPR003593 GO:0016887
Viun6g02553 1247 SMART AAA_5 1032 1225 IPR003593 GO:0016887
Viun6g02553 1247 CDD ABC_MTABC3_MDL1_MDL2 1005 1240 - -
Viun6g02553 1247 PANTHER ABC TRANSPORTER B FAMILY 2 594 IPR039421 -
Viun6g02553 1247 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 988 - -
Viun6g02553 1247 Pfam ABC transporter transmembrane region 684 955 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02553 1247 Pfam ABC transporter transmembrane region 32 304 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02553 1247 Gene3D ABC transporter type 1, transmembrane domain 972 994 IPR036640 GO:0005524|GO:0016020
Viun6g02553 1247 Gene3D ABC transporter type 1, transmembrane domain 663 971 IPR036640 GO:0005524|GO:0016020
Viun6g02553 1247 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 684 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02553 Viun-Chr6 30194723 30199946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02553 4 1243 Calmodulin-binding Proteins AT2G36910 43.151 0.0 1003