Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02550 ATGCGAGTAAAGAACACCACTGGTTTCCTCAAGGGCTCGCTTAGACAAGTCGTTCTCGCTGACATCATAGCAGTGGTACATAAGGGCAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCGGCTTGTTCGTCTACAAGAAGGAAATAAAGTAGCAGAAGAAGTGAGCCGTAAGTCAGAAGCAGATAAGTCAAATAACAACATTTTGAACCTAAGTCGGAGAACATCCTTTGCAAGATCGAGCAGTAGACACTCTCTCTCACTTAGTTTTGCTCTTCCTTATCAAATTCCCTTGCACGAGTCTGGAGTGGAGGATAACGGGGATGTTGAAAGTAGTGAAGTTGATGATAAGAAGCATCAAAAGGATGCTGTTAACTGTTTGGTCAAGTTGAACGAGCCAGAGGTTCCTGTCTTAGTACTAGGATCCTTTGCAGCCGCAATACATGGTCTTACTCTCCCTGTATTTGGACTCTTGCTCTCATCATCTGTTAACACGTTCTTTAAACCTCCTGATGTGCTTAGGACAGATTCTATGTTTTGGTCATTTCTATTTGTTGGTTTGGGGATTGTCGGTCTGGTGGCTATGACATTGCAAAACTACTTATTTGGGATAGCAGGTGGGAAACTTATAGAGCGAATTCGTTCAATGGCATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGCGAGAAGTCTCGTCGGTGACAACTTATCCCTCATTGTGCAAAACATAGCAACAATCACAACTGGTTTAGCTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTTATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAGAAGGATTCAGTGCAGATGCAAAGGTGAATTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGCTTGGGGCTTGTTAGTGGTGTAGGACTAGGCTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACGTAGGATCGCTTCTTGTGCAAGACGGGAAAGCAACCTTTGAAGACGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATAATCAAAATTCTTGAGACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCAAAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTAAGCTTTTGTTACCCAACAAGGCCTGACATTCAAATCTTCAAGGATTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCATAGAGAGATTTTACAACCCTGATTCTGGACGTGTGCTACTCGATGGAGTGGATATAAAAAACTTGAGACTGAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTGAAGAGCCTATTCTTTTCAATGACAGTATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCCACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATATGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGGACGAGGGACACAACTGTCAAGAGGACAAAAACAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAAAATCCTTTTGCTGGATGGGGCAACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTCAGTGTTAATAGAACTACCGTTGTGGTAGCTCACCGTCTTCCAACAATTAAAGGTGCTGACATTATAGCAGTCGTCAAAAATGGGGTCATTGCTGAGAAGGGGAACCATGAAGCGTTGATGAAGATTGATGGAGTTTATGCTTCATTGGTATCTCTGCATATTAGTCAATCATAG 2136 0.4316 MRVKNTTGFLKGSLRQVVLADIIAVVHKGKIVEKGTHDELIKDADGAYSRLVRLQEGNKVAEEVSRKSEADKSNNNILNLSRRTSFARSSSRHSLSLSFALPYQIPLHESGVEDNGDVESSEVDDKKHQKDAVNCLVKLNEPEVPVLVLGSFAAAIHGLTLPVFGLLLSSSVNTFFKPPDVLRTDSMFWSFLFVGLGIVGLVAMTLQNYLFGIAGGKLIERIRSMAFNKVVHQEISWFDHPSNSCGAVSARLATDASTARSLVGDNLSLIVQNIATITTGLAIAFTANWILAFVILAVSPLLLLQGYLQTKFVEGFSADAKVNYEEASQVANDAIGSIRTVASFCAEPKVVDMYKKKCSGPEKQGVRLGLVSGVGLGFSFLALYCTNAFCFYVGSLLVQDGKATFEDVFKVFFALTVTAVGVSQSSALAPDTNKAKDSATSIIKILETKSAIDSSSDEGKTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLIERFYNPDSGRVLLDGVDIKNLRLSWLRQQMGLVGEEPILFNDSIRANIAYSKEGGATEEEIVAAAEAANAHKFICSLPHSYDTPVGGRGTQLSRGQKQRIAIARAILKDPKILLLDGATSALDAESECVVQEALDKVSVNRTTVVVAHRLPTIKGADIIAVVKNGVIAEKGNHEALMKIDGVYASLVSLHISQS 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02550 711 CDD ABC_6TM_Pgp_ABCB1_D2_like 138 452 - -
Viun6g02550 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 706 IPR027417 -
Viun6g02550 711 CDD ABC_MTABC3_MDL1_MDL2 469 704 - -
Viun6g02550 711 Gene3D ABC transporter type 1, transmembrane domain 437 458 IPR036640 GO:0005524|GO:0016020
Viun6g02550 711 Gene3D ABC transporter type 1, transmembrane domain 127 436 IPR036640 GO:0005524|GO:0016020
Viun6g02550 711 Gene3D ABC transporter type 1, transmembrane domain 57 76 IPR036640 GO:0005524|GO:0016020
Viun6g02550 711 FunFam ABC transporter B family member 1 127 435 - -
Viun6g02550 711 PANTHER ABC TRANSPORTER B FAMILY 122 706 IPR039421 -
Viun6g02550 711 SMART AAA_5 496 689 IPR003593 GO:0016887
Viun6g02550 711 Gene3D - 6 56 IPR027417 -
Viun6g02550 711 Gene3D - 459 707 IPR027417 -
Viun6g02550 711 Gene3D - 108 126 IPR027417 -
Viun6g02550 711 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 469 706 IPR003439 GO:0005524
Viun6g02550 711 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 148 434 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02550 711 SUPERFAMILY ABC transporter transmembrane region 136 448 IPR036640 GO:0005524|GO:0016020
Viun6g02550 711 Pfam ABC transporter transmembrane region 148 419 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02550 711 FunFam ABC transporter B family member 1 459 708 - -
Viun6g02550 711 Pfam ABC transporter 488 637 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02550 Viun-Chr6 30142823 30146069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02550 3 707 Calmodulin-binding Proteins AT2G36910 39.696 2.30e-160 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02550 K05658 - gmx:100792531 1067.76