Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02549 ATGCGAGTAAAGAACACCACTGGTTTCCTCAAGGGCTCGCTTAGACAAGTCGTTCTCGCTGACATCATAGCAGTGGTACATAAGGGCAAAATTGTGGAGAAAGGAACTCATGATGAGTTAATCAAGGATGCTGATGGTGCTTATTCTCGGCTTGTTCGTCTACAAGAAGGAAATAAAGTAGCAGAAGAAGTGAGCCGTAAGTCAGAAGCAGATAAGTCAAATAACAACATTTTGAACCTAAGTCGGAGAACATCCTTTGCAAGATCGAGCAGTAGACACTCTCTCTCACTTAGTTTTGCTCTTCCTTATCAAATTCCCTTGCACGAGTCTGGAGTGGAGGATAACGGGGATGTTGAAAGTAGTGAAGTTGATGATAAGAAGCATCAAAAGGATGCTGTTAACTGTTTGGTCAAGTTGAACGAGCCAGAGGTTCCTGTCTTAGTACTAGGATCCTTTGCAGCCGCAATACATGGTCTTACTCTCCCTGTATTTGGACTCTTGCTCTCATCATCTGTTAACACGTTCTTTAAACCTCCTGATGTGCTTAGGACAGATTCTATGTTTTGGTCATTTCTATTTGTTGGTTTGGGGATTGTCGGTCTGGTGGCTATGACATTGCAAAACTACTTATTTGGGATAGCAGGTGGGAAACTTATAGAGCGAATTCGTTCAATGGCATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGGTATGTTGAGGTGATAATTACTTCCAACTATAAAAGACAAAATAAACATGCAATCATGTCATATATTAATTCCTTCAACTCATCTAACTCAAAAAAAAAATATGGATTTCCATGCAGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGCGAGAAGTCTCGTCGGTGACAACTTATCCCTCATTGTGCAAAACATAGCAACAATCACAACTGGTTTAGCTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTTATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAGAAGGATTCAGTGCAGATGCAAAGGTGAATTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGCTTGGGGCTTGTTAGTGGTGTAGGACTAGGCTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACGTAGGATCGCTTCTTGTGCAAGACGGGAAAGCAACCTTTGAAGACGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATAATCAAAATTCTTGAGACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCAAAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTAAGCTTTTGTTACCCAACAAGGCCTGACATTCAAATCTTCAAGGATTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCATAGAGAGATTTTACAACCCTGATTCTGGACGTGTGCTACTCGATGGAGTGGATATAAAAAACTTGAGACTGAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTGAAGAGCCTATTCTTTTCAATGACAGTATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCCACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATATGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGGACGAGGGACACAACTGTCAAGAGGACAAAAACAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAAAATCCTTTTGCTGGATGGGGCAACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTCAGTGTTAATAGAACTACCGTTGTGGTAGCTCACCGTCTTCCAACAATTAAAGGTGCTGACATTATAGCAGTCGTCAAAAATGGGGTCATTGCTGAGAAGGGGAACCATGAAGCGTTGATGAAGATTGATGGAGTTTATGCTTCATTGGTATCTCTGCATATTAGTCAATCATAG 2253 0.4239 MRVKNTTGFLKGSLRQVVLADIIAVVHKGKIVEKGTHDELIKDADGAYSRLVRLQEGNKVAEEVSRKSEADKSNNNILNLSRRTSFARSSSRHSLSLSFALPYQIPLHESGVEDNGDVESSEVDDKKHQKDAVNCLVKLNEPEVPVLVLGSFAAAIHGLTLPVFGLLLSSSVNTFFKPPDVLRTDSMFWSFLFVGLGIVGLVAMTLQNYLFGIAGGKLIERIRSMAFNKVVHQEISWFDHPSNSWYVEVIITSNYKRQNKHAIMSYINSFNSSNSKKKYGFPCSGAVSARLATDASTARSLVGDNLSLIVQNIATITTGLAIAFTANWILAFVILAVSPLLLLQGYLQTKFVEGFSADAKVNYEEASQVANDAIGSIRTVASFCAEPKVVDMYKKKCSGPEKQGVRLGLVSGVGLGFSFLALYCTNAFCFYVGSLLVQDGKATFEDVFKVFFALTVTAVGVSQSSALAPDTNKAKDSATSIIKILETKSAIDSSSDEGKTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLIERFYNPDSGRVLLDGVDIKNLRLSWLRQQMGLVGEEPILFNDSIRANIAYSKEGGATEEEIVAAAEAANAHKFICSLPHSYDTPVGGRGTQLSRGQKQRIAIARAILKDPKILLLDGATSALDAESECVVQEALDKVSVNRTTVVVAHRLPTIKGADIIAVVKNGVIAEKGNHEALMKIDGVYASLVSLHISQS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02549 750 SUPERFAMILY ABC transporter transmembrane region 136 659 IPR036640 GO:0005524|GO:0016020
Viun6g02549 750 Pfam ABC transporter 527 676 IPR003439 GO:0005524
Viun6g02549 750 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 508 745 IPR003439 GO:0005524
Viun6g02549 750 Gene3D ABC transporter type 1, transmembrane domain 476 497 IPR036640 GO:0005524|GO:0016020
Viun6g02549 750 Gene3D ABC transporter type 1, transmembrane domain 283 475 IPR036640 GO:0005524|GO:0016020
Viun6g02549 750 CDD ABC_MTABC3_MDL1_MDL2 508 743 - -
Viun6g02549 750 Gene3D - 498 746 IPR027417 -
Viun6g02549 750 SMART AAA_5 535 728 IPR003593 GO:0016887
Viun6g02549 750 CDD ABC_6TM_Pgp_ABCB1_D2_like 138 491 - -
Viun6g02549 750 FunFam ABC transporter B family member 1 498 747 - -
Viun6g02549 750 Gene3D - 14 71 IPR027417 -
Viun6g02549 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 499 745 IPR027417 -
Viun6g02549 750 PANTHER ABC TRANSPORTER B FAMILY 122 745 IPR039421 -
Viun6g02549 750 Gene3D ABC transporter type 1, transmembrane domain 72 244 IPR036640 GO:0005524|GO:0016020
Viun6g02549 750 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 148 473 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02549 750 Pfam ABC transporter transmembrane region 284 458 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02549 750 Pfam ABC transporter transmembrane region 148 240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02549 Viun-Chr6 30142818 30146109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02549 3 746 Calmodulin-binding Proteins AT2G36910 37.827 7.26e-153 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02549 K05658 - gmx:100792531 1050.43