Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02548 TGGTGTCTTGTCGTCCAGGACTCACAAACTCCGTTTAAAAACCATGGAAAAGCCGTAGACAAAAGGGAAAAACCATTAAAAATGGCTAACTTCAGTGGTAGTTACAGTACTTCTGGTTTCATTTGTTATGGCCTTGTACTTCCCCTTCTTCTGTTGTCACTGTTCTTCCTTCAATTAGCACGGTGTGGCTCCACGGTTAAGTTCCTTCCTGGATTCGATGGACCCCTTCCTTTTGTCTTTGAAACCGGATATGTGGGAGTGGGTGAATCAGAGGATGTGCAGGCATTCTACTACTTCATTGAGTCAGAGAACAATCCAAAAGACGATCCTCTCATGCTTTGGCTCACCGGTGGCCCTGGCTGTTCAGCCCTCTCTGGCCTTGTCTTAGAAATAGGTCCTCTTGGTTTTAAGTACGAGGAATATGATGGAACCATCCCTAAGTTGTTCTACAGGCAACACTCTTGGACTAAGGTTAGTAGCATAATATTTGTAGACTTGCCAGTTTTCACTGGATTCACTTATCCCACAACAGAGTCTGCTGCTCAACGAAGTGACTGGATAATTGTTCGCCAGGCCCATCAATTTCTAAGGAAGTGGCTGATTGATCATCCAACTTTTTTGTCAAACGAAGTTTACATCGGTGGCGATTCGTACTCTGGCATTCCTATCCCAGTGATTGTTCAAGAAATTTCACAAGCAAATGAAAAAGGGGTTCAACCATGGATAAATCTCCAGGGATACCTGTTAGGGAATGCTGCTACTACTGGAAGCGACTTTAATTATCGAATTCCTTATTCTCATGGAATGGGACTTATTTCCGATGAATTATATCAGGTAATTTCAAAAAATTGTAGAGGAGAGTACATAAAAGTAGACGTCAAAAATGTATTATGCTCTAGAGATATCGAGTCATTCAACGAGGCTTTATCAGGAATTAACAGTGCCTATATTTTGGACCCATCATGTGAGTGGATTGATAGTGAAACATCTTGGAGGAGATCACTAATTAAGAAATATCCCACCACGAATTTCCTAAATACTCGTCTCAAATTGCCATCCTTAAACTGTCGAAGTTATGTATACTTCCTCTGCGGTTTCTGGGCCAATGATGATAGTGTTCGCACTGCATTACATATCCGTCAGGGAAGCATAGGAAAATGGCGTCGTTGTACGTTCGATATACCTCACAAGAGAGATATCCCAAGCAGTTTTGAGTATCACGTAAATCTCAGTAGAATGGGCTATCGTTCGCTCATATACAGTGGCGATCATGACCTTTTGATTCCTTTCTTGGCAACTCAAGCATGGGTCAAATCTTTAAACTACTCCATTGTAGATGATTGGAGGCAATGGCATACAAATGGCCAAGTTGCAGGATACACCAGGACTTACTCCAATGGAATGACATTTGCAACTGTGAAGGGTGGAGGCCACACAGCTCCAGAGTACAAACCTGAAGAATGCCTTGACATGTTCAGTAGATGGCTATCTAAGAGGCCTTTGTAG 1506 0.4236 WCLVVQDSQTPFKNHGKAVDKREKPLKMANFSGSYSTSGFICYGLVLPLLLLSLFFLQLARCGSTVKFLPGFDGPLPFVFETGYVGVGESEDVQAFYYFIESENNPKDDPLMLWLTGGPGCSALSGLVLEIGPLGFKYEEYDGTIPKLFYRQHSWTKVSSIIFVDLPVFTGFTYPTTESAAQRSDWIIVRQAHQFLRKWLIDHPTFLSNEVYIGGDSYSGIPIPVIVQEISQANEKGVQPWINLQGYLLGNAATTGSDFNYRIPYSHGMGLISDELYQVISKNCRGEYIKVDVKNVLCSRDIESFNEALSGINSAYILDPSCEWIDSETSWRRSLIKKYPTTNFLNTRLKLPSLNCRSYVYFLCGFWANDDSVRTALHIRQGSIGKWRRCTFDIPHKRDIPSSFEYHVNLSRMGYRSLIYSGDHDLLIPFLATQAWVKSLNYSIVDDWRQWHTNGQVAGYTRTYSNGMTFATVKGGGHTAPEYKPEECLDMFSRWLSKRPL 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02548 501 FunFam Serine carboxypeptidase-like 11 60 501 - -
Viun6g02548 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 163 IPR001563 GO:0004185|GO:0006508
Viun6g02548 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Viun6g02548 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 164 174 IPR001563 GO:0004185|GO:0006508
Viun6g02548 501 PRINTS Carboxypeptidase C serine protease (S10) family signature 199 224 IPR001563 GO:0004185|GO:0006508
Viun6g02548 501 Pfam Serine carboxypeptidase 70 497 IPR001563 GO:0004185|GO:0006508
Viun6g02548 501 SUPERFAMILY alpha/beta-Hydrolases 66 500 IPR029058 -
Viun6g02548 501 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 65 485 IPR001563 GO:0004185|GO:0006508
Viun6g02548 501 FunFam Carboxypeptidase 404 498 - -
Viun6g02548 501 Gene3D alpha/beta hydrolase 76 500 IPR029058 -
Viun6g02548 501 FunFam Carboxypeptidase 355 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02548 Viun-Chr6 30126508 30130232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02548 60 89 Calmodulin-binding Proteins AT2G22960 66.667 1.51e-07 50.1