Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02539 ATGAGACTTTCTTCAGCTGGTTTTAGTCCTCCGCCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCTTTACCAGCAGTTGGTAGCCGCGTGGTATACTTTCCACAAGGTCACAGTGAACAAGTGGCTGTTTCGACCAACAAGGAAGTGGATGCTCATATCCCAAATTACCCAAGCTTGCCTCCTCAACTCATTTGTCAACTTCATAACATGACTATGCATGCTGATGCAGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCACAAGAGCAAAAGGAGGCATACCTTCCAGCAGAATTGGGCACTCCTAGTAAACAGCCAACAAACTATTTCTGCAAAACTTTGACTGCAAGTGACACAAGCACTCATGGGGGATTCTCTGTACCTCGCCGTGCAGCTGAAAAAGTATTCCCTGCATTGGATTTTTCTCAGCAGCCTCCTGCTCAAGAATTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGCCAGCCCAAAAGGCATCTACTTACAACTGGGTGGAGTGTCTTTGTGAGTGCTAAAAGACTTGTAGCTGGTGATTCTGTGCTGTTTATCTGGAATGAAAAGAACCAACTTCTTCTTGGGATCCGCCGTGCTAACCGACCACAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCAGCAGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAATCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCGAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGGTTCAGGATGTTGTTTGAAACTGAGGAATCAAGTGTGCGGCGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGCCCGGTGGCCAAACTCACACTGGCGCTCAGTGAAGGTTGGCTGGGATGAATCTACTGCTGGAGAGAGACAACCTAGAGTGTCTCTGTGGGAAATTGAGCCATTAACTACATTTCCTATGTATCCGTCTCCCTTCCCCCTTAGGCTTAAACGACCATGGCCTCCAGGACTGCCTTCATTCCATGGCATGAAGGATGATGATTTTGGCCTAAATTCATCTCTCTTGTGGCTCCGAGACAGTGATAGGGGACTTCAGTCTCCTACTTTTCAGGGGATTGGTGTTAATCCTTGGATGCAGCCTAGATTTGATCCCTCTATGTTGAATATGTCAACAGATATGTATCAAGCTGCAGCTGCTGCTGCTGCTGTTCAGGAGATGAGGGGTTTGGATCCTTCCAAACAGCATTCTGCATCCATACTTCAATTTCAACAACCGCAAAATTTCCCAAACAGGACCGCTGCTTTTGTGCAGGCCCAGATGTTGCAGCAGCCACAGCATCAGCAGATTTTTGGAAATAATCAAGAGAATCAGCATTCACCACAATCTCAGCTGCAAACTCAGGCTCATCTACAGCAACATTTACAACATCAGCACTCATTCAATACTCAGCATCATCATCAGCACCAGCAACAACAACTACGGCAGACACAGCAGCAACAACAACAGCAACAAGTTGTAGATAATCAGCAAATTTCTAGTGCAGTTTCTTCAATGTCTCAGTTTGTTTCAGCTCCTCCACCTCAATCACCACCTATGCAAGCTATCTCTTCCTTGTGCCAACAGCAAAATTTTTCTGATTCGAATGGGAACTCTGTGCCTACTATTGTTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCACAGGATGAAACATCTCACCTCCTGAACCTTCCTAGAACAAGCTCTTGGATTCCTGTTCAAAATTCAACAGGGTGGCCTTCGAAGCGTGTTGCAGTGGATCCTCTTCTTTCTACCGGAGTCTCTCAATGTGTTCTACCTCAGGTGGAGCAGCTAGGGCAGCCCCAGAGTACTGTGTCTCAAAATGCTATTACCTTACCACCTTTTCCTGGTAGGGAGTGCTCCATAGACCAAGAAGGGAGCAATGATCCACAAAACCATCTCTTATTTGGTGTTAATATAGATTCAACGTCCCTTCTCATGCCTAATGGAATGTCAACCCTTAAGGGGGTTAGCAGCAACAATGACTCCTCAACCATGCCATATCAATCTTCTAATTATCTGAATACCACCACAGGGACTGATTCTTCATTGAATCATGGAATAACACCCAGTATTGGCGGTGAATCAGGTTACCTGCAGAGTCCAGAAAATGCTGGACAAGGAAACCCACTGAACAAAACCTTTGTGAAGGTTTATAAGTCAGGGTCCTTTGGAAGGTCACTGGATATCACTAAATTCAGCAGCTACCATGAGCTGCGAAGTGAACTTGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTTGTAGACCGAGAGAACGATGTTCTTCTCCTTGGTGATGGCCCCTGGCCGGAATTCGTAAATAGTGTATGGTGCATAAAGATACTTTCTCCTCAGGAAGTGCAGCAAATGGGGAATTCTGGCCTCGAGCTATTGAACTCGGTTCCAATTCAAAGGCTCTCTAACGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGAATAACAGCAGTGGGGTCTTTAGACTACTGA 2733 0.4588 MRLSSAGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNMTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPALDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSSLLWLRDSDRGLQSPTFQGIGVNPWMQPRFDPSMLNMSTDMYQAAAAAAAVQEMRGLDPSKQHSASILQFQQPQNFPNRTAAFVQAQMLQQPQHQQIFGNNQENQHSPQSQLQTQAHLQQHLQHQHSFNTQHHHQHQQQQLRQTQQQQQQQQVVDNQQISSAVSSMSQFVSAPPPQSPPMQAISSLCQQQNFSDSNGNSVPTIVSPLHSILGSFPQDETSHLLNLPRTSSWIPVQNSTGWPSKRVAVDPLLSTGVSQCVLPQVEQLGQPQSTVSQNAITLPPFPGRECSIDQEGSNDPQNHLLFGVNIDSTSLLMPNGMSTLKGVSSNNDSSTMPYQSSNYLNTTTGTDSSLNHGITPSIGGESGYLQSPENAGQGNPLNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPVRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNSGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITAVGSLDY 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02539 910 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Viun6g02539 910 MobiDBLite consensus disorder prediction 496 554 - -
Viun6g02539 910 Pfam AUX/IAA family 770 862 IPR033389 -
Viun6g02539 910 SUPERFAMILY CAD & PB1 domains 776 852 - -
Viun6g02539 910 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Viun6g02539 910 FunFam Auxin response factor 125 229 - -
Viun6g02539 910 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Viun6g02539 910 ProSiteProfiles PB1 domain profile. 777 861 IPR000270 GO:0005515
Viun6g02539 910 Gene3D - 291 363 - -
Viun6g02539 910 Gene3D - 125 228 IPR015300 -
Viun6g02539 910 MobiDBLite consensus disorder prediction 748 770 - -
Viun6g02539 910 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Viun6g02539 910 Gene3D - 774 866 - -
Viun6g02539 910 FunFam Auxin response factor 773 866 - -
Viun6g02539 910 FunFam Auxin response factor 291 363 - -
Viun6g02539 910 SMART B3_2 127 229 IPR003340 GO:0003677
Viun6g02539 910 CDD B3_DNA 126 227 IPR003340 GO:0003677
Viun6g02539 910 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 866 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02539 Viun-Chr6 30084736 30091534 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02539 1 484 B3 DNA Binding Superfamily AT1G30330 85.481 0.0 839
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Viun6g02539 AUX_IAA 2.4e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02539 - - gmx:100798719 1597.79