Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02518 ATGGAAGAGGATGAGATTCAAGCACAGGCAGTGTGTAAGTTCCCTAGAGTTGGAAATGGAAGGAACGACCAATACCAAGAGGAGGAAGAAGAGGTAGACATAAGAAGAAGAGGTATTGGTGGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAAGTGATGCCAGCACAAACCATTTCCAAAGCAGCTGGCACCACTCTTCGAGAATCATTAGGGTGTCTCGAGCGTCTGGTGGGAAAGACAGGCACAGCAAGGTGATGACCTCAAAGGGGTTAAGAGACAGAAGGGTTAGGCTCTCGGTGACCACGGCCATTCAGTTCTACGACCTTCAAGATCGGTTGGGTTATGACCAGCCCAGTAAGGCTGTGGAGTGGTTAATCAATGCTGCTTCCGATGCTATCTCAGAGCTTCCTTCTCTCAACAACCCCTTCCCTGATACCCCTAAGCAGCCAAGCGACGAGAAAAGGCCAACCAGTGGTCAACGTGGGGTTCAACCACAGGCCTTTGATGATGCAGACGGAGACACCAATTTCCTCCACCAAACCCAAAACCAAAGCCAGAACCTCTCTCTCTCCAAGTCTGCTTGCAGCAGCACTTCCGAGACAAGCAAGGGTTCGGGCCTGTCCCTCTCTAGGTCTGAGATCCGTGTGAACCGTGTGAAGGCAAGGGAGAGGGCAAGGGTAAGAGCTGCAAAAGAGAAGGGAAAAGATAGGGACAAGGAGAAGGAGAAAGAGAAAGAGAACGAGTCTGGCATTGCACACCACCACCACCATCACCACCACCACAATGTCAACAACCCCAACCATATGTCTCACACTGCTTCCTTCACCGAGCTTCTCACCGGTGGGATTGGGAGCACAGTAACGGTTAACCCCACCACCACAGCAAGTCCTAATGGATCATCTGTTCATCAGATCCATGAGGGTCACGACGAGGCCAATATATTCAACAAGGGAAGACAACAACAACAACAACAACATTGGTCTTCAGCAGTGACACCTATGGACTACTTCAGCCAAGGAGGCCTCTTGGTGGGACCTTCATCATCATCTGCAAGAACTCAACACCAACACCAACACCAACATCAATCTTCTTCGGGACAGTTCCAATTGGGACATGCCCTTCCCATCTCACCATTCAGTGGAGAAAACCAGTCGGATCAGATGCAGCATTTTTCGTTCATGCCAGACCACCTGAACATGCCGGCCGTGGTGACTTCTTCTTCTTCTGCTTCTCAGCCCAGCGGGGGTGACAATTACAACCTCAACTTCAGCATCTCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCCTTTTTGCCTCACCTCCAGAGGTTTCAACCTTTAGACGGATCATCCAATCTACCTTTCTTCATCGGAGCTCCTGCTCCTTCTTCTGCTCCTCCAACCATTGACAGCAACAACAATAACAACAACAACCACCACCACCACCTTCAGTTCTCTCCCGTCTTCGATGGCCGCTTGCAACTTTGCTATGGCGATGGAACAAGGCATTCTGACCACAAGGGCAAGGGAAAGAACTAA 1560 0.5115 MEEDEIQAQAVCKFPRVGNGRNDQYQEEEEEVDIRRRGIGGGGGGGGGGGGSDASTNHFQSSWHHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLNNPFPDTPKQPSDEKRPTSGQRGVQPQAFDDADGDTNFLHQTQNQSQNLSLSKSACSSTSETSKGSGLSLSRSEIRVNRVKARERARVRAAKEKGKDRDKEKEKEKENESGIAHHHHHHHHHNVNNPNHMSHTASFTELLTGGIGSTVTVNPTTTASPNGSSVHQIHEGHDEANIFNKGRQQQQQQHWSSAVTPMDYFSQGGLLVGPSSSSARTQHQHQHQHQSSSGQFQLGHALPISPFSGENQSDQMQHFSFMPDHLNMPAVVTSSSSASQPSGGDNYNLNFSISSGLAGFNRGTLQSNSPSFLPHLQRFQPLDGSSNLPFFIGAPAPSSAPPTIDSNNNNNNNHHHHLQFSPVFDGRLQLCYGDGTRHSDHKGKGKN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02518 519 Pfam TCP family transcription factor 77 233 IPR017887 -
Viun6g02518 519 MobiDBLite consensus disorder prediction 135 270 - -
Viun6g02518 519 MobiDBLite consensus disorder prediction 471 490 - -
Viun6g02518 519 ProSiteProfiles R domain profile. 215 233 IPR017888 -
Viun6g02518 519 MobiDBLite consensus disorder prediction 1 66 - -
Viun6g02518 519 MobiDBLite consensus disorder prediction 175 212 - -
Viun6g02518 519 ProSiteProfiles TCP domain profile. 78 136 IPR017887 -
Viun6g02518 519 MobiDBLite consensus disorder prediction 472 490 - -
Viun6g02518 519 MobiDBLite consensus disorder prediction 342 371 - -
Viun6g02518 519 MobiDBLite consensus disorder prediction 22 37 - -
Viun6g02518 519 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 393 IPR005333 GO:0003700
Viun6g02518 519 MobiDBLite consensus disorder prediction 338 386 - -
Viun6g02518 519 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02518 Viun-Chr6 29935629 29944644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02518 56 519 TCP Transcription Factor Family AT4G18390 41.104 1.05e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Viun6g02518 TCP 1.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02518 - - gmx:100787772 686.026