Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02490 ATGTCGCTTTCCTGTGCAAAAACCTTCTTCCAGAGGTTCTGGCTAGATGAATACCAAATGGGTAATATTCCCCACGGAAGCTTTTTGGCCAATGATGATCTCCTGCCATCTCTTGGAGCCAGAATTAACCAGGAAATTAGACTTAGAAGATACGTAATCTCCCCTTTCAATCCCCGCTATAGGGCTTGGGAGTTGGTACTGGTTGTTCTAGTCATATACTCAGCTTGGATTTGCCCATTTGAGTTTGCCTTTCTGCCTTACAAGGAAGATGCTCTATTCATCATAGACAACATTGTCAATGGCTTCTTTGCAATTGACATAGTGTTGACATTCTTTGTTGCATACCTTGACCACCATTCTTATCTTCTTGTTGATGATCCCAAGAGGATTGCAATCAGGTACCTATCTTCCTGGTTTGCCTTTGATCTCTGCTCAACAGTACCCTTTCAATCCTTCAGCTTCCTCTTCACGAATAGTAGCAGTGAGCTCGGCTTCAAAGTTTTTAACATGTTTCGGTTATGGCGTTTGAGACGAGTCAGTTCTCTGTTTGCAAGGCTCGAAAAGGACATTCGCTTCAATTATTTCTGGATTAGGTGCACAAAGCTCATTGCTGTGACCTTGTTTGCTGTGCACTGTGCGGGATGCTTTAACTATCTCATTGCAGATAGGTACCCAGATTCCAAAAGAACCTGGATTGGTGCAGTGTACCCAAATTTCAAAGTAGAAAGTCTTTGGGACAGATATGTCACTGCAATATACTGGTCCATTGTCACTCTTACTACCACTGGCTATGGGGATTTACATGCTGAGAACACAAGAGAGATGCTGTTTGATATCGCTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACGAACCTTGTAGTCCACTGGACCAGCCGTACCAGAAATTTTAGAGACACAGTGAAAGCAGCTTCTGAATTTGCATCAAGAAATCATTTGCCCCACCGCATACAAGATCAGATGTTGTCACATATATGTTTGAGGTTTAAAACCGAAGGACTGAAGCAGCAAGAAACATTGAATGATCTTCCAAAGGCAATTCGTTCAAGCATTGCACACCATCTGTTTTTTCCTGTCGTGCAAAAGGTCTACCTTTTCCAAGGAGTCTCACATGATTTCCTTTTCCAACTGATTTCAGATATGGAAGCTGAATATTTCCCACCCAAGGAAGATGTGATACTACAAAACGAGTCCTCTACGGAACTTTATGTGCTGGTTTCAGGGGCAGTGGATCTGGTTCGCTACATCGAAGGGCATGATAATGTTCATGGGAAGGCAGTTGCAGTCGATGCGTTTGGAGAGATTGGAGTTTTGTATCAGATACCCCAGCCTTTTACAGTTCGCACAACAGAACTTTCTCAGATTTTAAGACTCAACAAAACATCCTTAATGAATGTTTTACAAGCAAATCCAGGAGAAGCACAAATTATAATGGATAACCTTTTAATGAGGTTGAAGGGGCGTGAAGATTTTGGCTTTGAATTCCCGTGCACAGATTCTGGGCGGTTTCCAAATGAACTGCTTCAAGGAGATCATACGATACGAAGCTCTTCTCACGAGTGTTCAAATAATTCACATGAACATTCATTAATGCGTGAAGGAGAGAGCATAGATATTAGAAAGTCTGAGACCAGTTTGCGTAATGTGACTAATGATGATCATTTAGTCACTAAACATAGCGTGATCCCCGAGCATGATACAAGAGAAGCTCGTGGCCCTGCACACAAAGGGAATCTAGATATTGTTGAAATTCTGCTGGAAAGAGGATCAAATCCTAACGCAAATTCCATAGGGTGGACACAAAATGCTCTGGCGAAACAGCTGAAAAACAAGAGCATTTGTGACCCAAAAAGGAGTCATGAAAACGAGAAGTTGGATGAATTTAGAATAGAGATAGAGGAGCCAGAAATCTTCCTTGACAGGGATAGCTCAACGAGAAACAGAAGACATGGTGGTATTAGATCTATTAAGTACCCAAAAGAAAACATAAGCACAAACTCCAATTCAAGAAATTCTAAGTGTCCAAGTGATATCGAAACGGCAAGGCTTCCCAAGAAGAGAGTAACAATCCAGTTGCTACATGGATGCAGGAGTAGCTCACACGGAAGCCACGGAAAATTAATAATCCTGCCCGATTCGTTAGAAGAGCTGCTCAAAATTGCCGGTGAAAAATTTGGCGGCTTCAACCCTACAAAAGTAGTAAATACAGAGAATGCAGAGATAGATGACATAAATGTAATCCGAGATGGAGATCGTCTCTTTCTTCTGTGCGGCGATAACGAAACTTTGAGTTGA 2334 0.4182 MSLSCAKTFFQRFWLDEYQMGNIPHGSFLANDDLLPSLGARINQEIRLRRYVISPFNPRYRAWELVLVVLVIYSAWICPFEFAFLPYKEDALFIIDNIVNGFFAIDIVLTFFVAYLDHHSYLLVDDPKRIAIRYLSSWFAFDLCSTVPFQSFSFLFTNSSSELGFKVFNMFRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLIAVTLFAVHCAGCFNYLIADRYPDSKRTWIGAVYPNFKVESLWDRYVTAIYWSIVTLTTTGYGDLHAENTREMLFDIAYMLFNLGLTSYIIGNMTNLVVHWTSRTRNFRDTVKAASEFASRNHLPHRIQDQMLSHICLRFKTEGLKQQETLNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSHDFLFQLISDMEAEYFPPKEDVILQNESSTELYVLVSGAVDLVRYIEGHDNVHGKAVAVDAFGEIGVLYQIPQPFTVRTTELSQILRLNKTSLMNVLQANPGEAQIIMDNLLMRLKGREDFGFEFPCTDSGRFPNELLQGDHTIRSSSHECSNNSHEHSLMREGESIDIRKSETSLRNVTNDDHLVTKHSVIPEHDTREARGPAHKGNLDIVEILLERGSNPNANSIGWTQNALAKQLKNKSICDPKRSHENEKLDEFRIEIEEPEIFLDRDSSTRNRRHGGIRSIKYPKENISTNSNSRNSKCPSDIETARLPKKRVTIQLLHGCRSSSHGSHGKLIILPDSLEELLKIAGEKFGGFNPTKVVNTENAEIDDINVIRDGDRLFLLCGDNETLS 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02490 777 FunFam Potassium channel KAT3 62 302 - -
Viun6g02490 777 Pfam Cyclic nucleotide-binding domain 398 482 IPR000595 -
Viun6g02490 777 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Viun6g02490 777 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Viun6g02490 777 Gene3D Jelly Rolls 371 503 IPR014710 -
Viun6g02490 777 Gene3D Helix hairpin bin 302 368 - -
Viun6g02490 777 PRINTS EAG/ELK/ERG potassium channel family signature 107 116 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g02490 777 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g02490 777 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g02490 777 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g02490 777 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g02490 777 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249|GO:0006813|GO:0016020
Viun6g02490 777 CDD CAP_ED 378 491 IPR000595 -
Viun6g02490 777 FunFam Potassium channel KAT2 366 502 - -
Viun6g02490 777 Pfam Ion transport protein 61 307 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Viun6g02490 777 ProSiteProfiles KHA domain profile. 700 777 IPR021789 -
Viun6g02490 777 SUPERFAMILY cAMP-binding domain-like 305 498 IPR018490 -
Viun6g02490 777 Pfam KHA, dimerisation domain of potassium ion channel 699 768 IPR021789 -
Viun6g02490 777 Gene3D - 61 301 - -
Viun6g02490 777 PANTHER POTASSIUM CHANNEL AKT1 28 499 IPR045319 GO:0005249|GO:0006813
Viun6g02490 777 SMART cnmp_10 378 495 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02490 Viun-Chr6 29764319 29768603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02490 1 768 Ion Channels AT5G46240 57.943 0.0 870
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02490 K21867 - gmx:100811356 1337.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02490 6 29764319 29768603 Viun6g02490 6 29764319 29768603 ECH