Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun6g02481 | ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGGCTTGAAGAGCCTATGTGGCAATTGGGGTTGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCAATGAAGCTGATTGCACTTACTACTTGAGGACCGGTTTCTGTGGCTTCGGTTCGCGGTGTCGGTTCAATCACCCTCGTGACCGTGGCACGGTTGTTGGAGCTGAGAGGACTGCGGGGGAGTATCCGGAACGAGTTGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAATTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCTGGCAGGAGGTGCTGCTACCCCTGTGTCGCTAAATTATTATGGATATCCATTGCGTCCGGGTGAAAAGGAGTGCTCGTATTATGTGAAAACGGGGCAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCGGTTCCTGCTGGCGTCCAAATTCCAGCACCATCACCTGTTGCTCCAGTTTCGCCTTTGCCTGTTCCAGTGCCTTCTCCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCCGGCTCATTCGTCCAGAGTCCCTATGGACCTGTCGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCTGGTACTCCTAATGTTGGTTCAGCACAGATTTACGGGATGACGCAACTATCTTCATCAGCCGCTGCCTATCCTGGACCTTATCAACTTCCTGGTTCCTTAGTTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACCAGATTATCAGTATTATCCGAAAACAGGGGAGGTTAAAGTTGGTCCATCCTATAGGTATCACCCTCCACAAGAAATAACTTCACCAAAACCAAATGTGACTCTTAGTCCTGCTGGTCTTCCTTTGCGCCCGGGGGCCTCACCTTGTACACATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACTCTTGCTCCATCATCATCGTCATCAGAGTTGCGGCTGGAACTTTCCTCTGGATCCAACAAGGAGTCTGTTCCATCCAGAATGTCTTCATCGTCCGGAATGTTGACAGGGTCAATTGGCTTGACTTTGTCAACTGGTGGACCCATTTCTCAATCAAATAGTCAGCCATCTGCTCCAAGTCTGGATCCATTAGCCACTGCCACTAGTACTACAAGTAGCAATGTCTCTCACACCTCAAGCTAA | 1452 | 0.509 | MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGAAEESYPQRPNEADCTYYLRTGFCGFGSRCRFNHPRDRGTVVGAERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGAATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSFVQSPYGPVVLSPAMVPISGWGPYQASGTGAVLPSGTPNVGSAQIYGMTQLSSSAAAYPGPYQLPGSLVGPSSSSQKEQAFPERSNQPDYQYYPKTGEVKVGPSYRYHPPQEITSPKPNVTLSPAGLPLRPGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSNKESVPSRMSSSSGMLTGSIGLTLSTGGPISQSNSQPSAPSLDPLATATSTTSSNVSHTSS | 483 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun6g02481 | 483 | MobiDBLite | consensus disorder prediction | 286 | 312 | - | - | |
Viun6g02481 | 483 | SUPERFAMILY | CCCH zinc finger | 140 | 165 | IPR036855 | GO:0046872 | |
Viun6g02481 | 483 | SUPERFAMILY | CCCH zinc finger | 49 | 75 | IPR036855 | GO:0046872 | |
Viun6g02481 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | SUPERFAMILY | CCCH zinc finger | 352 | 379 | IPR036855 | GO:0046872 | |
Viun6g02481 | 483 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Viun6g02481 | 483 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | SMART | c3hfinal6 | 349 | 376 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | SMART | c3hfinal6 | 47 | 74 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | Gene3D | - | 44 | 124 | - | - | |
Viun6g02481 | 483 | Gene3D | - | 125 | 171 | - | - | |
Viun6g02481 | 483 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 411 | - | - | |
Viun6g02481 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | MobiDBLite | consensus disorder prediction | 286 | 311 | - | - | |
Viun6g02481 | 483 | MobiDBLite | consensus disorder prediction | 405 | 483 | - | - | |
Viun6g02481 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 164 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 50 | 74 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 119 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 352 | 376 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 349 | 377 | IPR000571 | GO:0046872 | |
Viun6g02481 | 483 | SUPERFAMILY | CCCH zinc finger | 95 | 118 | IPR036855 | GO:0046872 | |
Viun6g02481 | 483 | ProSiteProfiles | Zinc finger C3H1-type profile. | 47 | 75 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun6g02481 | Viun-Chr6 | 29648794 | 29660848 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun6g02481 | 1 | 451 | C2H2 Transcription Factor Family | AT5G18550 | 56.466 | 5.00e-155 | 447 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Viun6g02481 | zf-CCCH | 9.2e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun6g02481 | - | - | gmx:100812433 | 763.837 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun6g02481 | 6 | 29648794 | 29660848 | Viun6g02481 | 6 | 29648794 | 29660848 | ECH | |
Viun3g05784 | 3 | 63050574 | 63055279 | Viun6g02481 | 6 | 29648794 | 29660848 | PCT |