Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02481 ATGGAGCAGTACGGCCGGTCCAGTGAAGGTTCGCGGTCTGATCCGTCCCCGGAATGGGCCGGGCCCGGAGCCCAAACCGGGCTTGAAGAGCCTATGTGGCAATTGGGGTTGGGTGCTGCGGAGGAATCGTATCCGCAACGCCCCAATGAAGCTGATTGCACTTACTACTTGAGGACCGGTTTCTGTGGCTTCGGTTCGCGGTGTCGGTTCAATCACCCTCGTGACCGTGGCACGGTTGTTGGAGCTGAGAGGACTGCGGGGGAGTATCCGGAACGAGTTGGCCAGCCTGTGTGCCAGTATTACATGAGGACAAGAACGTGCAAATTTGGTTCGTCTTGCAAGTACCACCACCCGAGGCTGGCAGGAGGTGCTGCTACCCCTGTGTCGCTAAATTATTATGGATATCCATTGCGTCCGGGTGAAAAGGAGTGCTCGTATTATGTGAAAACGGGGCAATGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCGGTTCCTGCTGGCGTCCAAATTCCAGCACCATCACCTGTTGCTCCAGTTTCGCCTTTGCCTGTTCCAGTGCCTTCTCCGTTATATTCAACCATGCAGCCCCCACCTGGTCCTTCATCACAGCAAATTGGTGTGCTGGTTGCAAGGCCTCCTCTGCTGCCCGGCTCATTCGTCCAGAGTCCCTATGGACCTGTCGTACTGTCACCTGCCATGGTACCTATTTCTGGCTGGGGTCCTTATCAAGCTTCTGGAACAGGTGCTGTACTTCCTTCTGGTACTCCTAATGTTGGTTCAGCACAGATTTACGGGATGACGCAACTATCTTCATCAGCCGCTGCCTATCCTGGACCTTATCAACTTCCTGGTTCCTTAGTTGGTCCTTCAAGCAGTAGTCAGAAGGAGCAGGCATTTCCAGAAAGGTCTAATCAACCAGATTATCAGTATTATCCGAAAACAGGGGAGGTTAAAGTTGGTCCATCCTATAGGTATCACCCTCCACAAGAAATAACTTCACCAAAACCAAATGTGACTCTTAGTCCTGCTGGTCTTCCTTTGCGCCCGGGGGCCTCACCTTGTACACATTATGCACAACATGGAGTATGTAAGTTTGGTTCTGCATGCAAATTCGATCATTCTATGGGATCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACATGCCTGTTGCACCCTATCCTGTGGGTTCAACAATTGGTACTCTTGCTCCATCATCATCGTCATCAGAGTTGCGGCTGGAACTTTCCTCTGGATCCAACAAGGAGTCTGTTCCATCCAGAATGTCTTCATCGTCCGGAATGTTGACAGGGTCAATTGGCTTGACTTTGTCAACTGGTGGACCCATTTCTCAATCAAATAGTCAGCCATCTGCTCCAAGTCTGGATCCATTAGCCACTGCCACTAGTACTACAAGTAGCAATGTCTCTCACACCTCAAGCTAA 1452 0.509 MEQYGRSSEGSRSDPSPEWAGPGAQTGLEEPMWQLGLGAAEESYPQRPNEADCTYYLRTGFCGFGSRCRFNHPRDRGTVVGAERTAGEYPERVGQPVCQYYMRTRTCKFGSSCKYHHPRLAGGAATPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPVPAGVQIPAPSPVAPVSPLPVPVPSPLYSTMQPPPGPSSQQIGVLVARPPLLPGSFVQSPYGPVVLSPAMVPISGWGPYQASGTGAVLPSGTPNVGSAQIYGMTQLSSSAAAYPGPYQLPGSLVGPSSSSQKEQAFPERSNQPDYQYYPKTGEVKVGPSYRYHPPQEITSPKPNVTLSPAGLPLRPGASPCTHYAQHGVCKFGSACKFDHSMGSLSYSPSASSLADMPVAPYPVGSTIGTLAPSSSSSELRLELSSGSNKESVPSRMSSSSGMLTGSIGLTLSTGGPISQSNSQPSAPSLDPLATATSTTSSNVSHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02481 483 MobiDBLite consensus disorder prediction 286 312 - -
Viun6g02481 483 SUPERFAMILY CCCH zinc finger 140 165 IPR036855 GO:0046872
Viun6g02481 483 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Viun6g02481 483 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Viun6g02481 483 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872
Viun6g02481 483 MobiDBLite consensus disorder prediction 1 27 - -
Viun6g02481 483 SMART c3hfinal6 138 165 IPR000571 GO:0046872
Viun6g02481 483 SMART c3hfinal6 349 376 IPR000571 GO:0046872
Viun6g02481 483 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Viun6g02481 483 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Viun6g02481 483 Gene3D - 44 124 - -
Viun6g02481 483 Gene3D - 125 171 - -
Viun6g02481 483 PANTHER PROTEIN PHOSPHATASE RELATED 38 411 - -
Viun6g02481 483 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Viun6g02481 483 MobiDBLite consensus disorder prediction 286 311 - -
Viun6g02481 483 MobiDBLite consensus disorder prediction 405 483 - -
Viun6g02481 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 164 IPR000571 GO:0046872
Viun6g02481 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 74 IPR000571 GO:0046872
Viun6g02481 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Viun6g02481 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 352 376 IPR000571 GO:0046872
Viun6g02481 483 ProSiteProfiles Zinc finger C3H1-type profile. 349 377 IPR000571 GO:0046872
Viun6g02481 483 SUPERFAMILY CCCH zinc finger 95 118 IPR036855 GO:0046872
Viun6g02481 483 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02481 Viun-Chr6 29648794 29660848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02481 1 451 C2H2 Transcription Factor Family AT5G18550 56.466 5.00e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Viun6g02481 zf-CCCH 9.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02481 - - gmx:100812433 763.837
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02481 6 29648794 29660848 Viun6g02481 6 29648794 29660848 ECH
Viun3g05784 3 63050574 63055279 Viun6g02481 6 29648794 29660848 PCT