Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02480 ATGTCCACCTCTAGAACCTCAAATGTTTCTTCCCTCAAAGGATATGAGTCTAACCCAACCCAAATGAATTTATGTGTTCTTCAACGTAACACATCAAGTTCTGGTGAGAGAAGAGGGCGTGGAAAGCAAACAGAACCAGGAAGGTTTCTTGGTGTGAGAAGACGCCCTTGGGGTAGATATGCTGCTGAAATCAGAAACCCTTTAACTAAAGAAAGACATTGGCTTGGAACATTTGACACTGCCGAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGATGCCAAGCAAAAACCAACTTCGTATACTCCAAAGATACCAACGTTTTCAACAATGCTCACACTCCTTTCAATTCTCAACCTCTCTTGCCATTGCCACCTTCACATAACACTCACACCAATCAAACTACCATATCTCACGTTCCTACTTTCACTTCACACATTGAAAACCCTTCTGACTTATATGCTGATACTTGTTTTGGGTCACCTCAGGATGATAATTTCTTCTTCTCCACCGACTCTAACTCTGGTTACCTTCAATGCATTGTTCCCGGTAACTGTTTCAAGAAGAGCAATGCCAGTGCTTCAGGTCGTGACCTTGGCGACGTTAACTCAAACTCCATGCAGGTTCAGCCACATTTTGACACCACTCAAGAAGCCTTCAACATGCAAGCAACAGTGGCTGCTAACTATGCAGATTTTTCTTGCCCCACTGATCTTGGTGAAGGATTATGGGATAATCATCAATCATGGGATTTCAGTTCCAATGAACTAGCAGCCATGTTTAAAAATCCATCAAGGGTTGTTGAGGAAGGGTGCATGAATGCGTTGCGTCCCTTCACTGATAGCTCAAACTACGAACTAATGACTCAGGTTGTTTCTTCAACTACGTATTCTCCATCAGTTCCTCCCTTTGGGAATGTTGGCTTCTGA 942 0.4342 MSTSRTSNVSSLKGYESNPTQMNLCVLQRNTSSSGERRGRGKQTEPGRFLGVRRRPWGRYAAEIRNPLTKERHWLGTFDTAEEAALAYDRAALSMKGCQAKTNFVYSKDTNVFNNAHTPFNSQPLLPLPPSHNTHTNQTTISHVPTFTSHIENPSDLYADTCFGSPQDDNFFFSTDSNSGYLQCIVPGNCFKKSNASASGRDLGDVNSNSMQVQPHFDTTQEAFNMQATVAANYADFSCPTDLGEGLWDNHQSWDFSSNELAAMFKNPSRVVEEGCMNALRPFTDSSNYELMTQVVSSTTYSPSVPPFGNVGF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02480 313 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Viun6g02480 313 FunFam Ethylene-responsive transcription factor 2 48 106 - -
Viun6g02480 313 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Viun6g02480 313 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Viun6g02480 313 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Viun6g02480 313 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 32 206 - -
Viun6g02480 313 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Viun6g02480 313 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Viun6g02480 313 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Viun6g02480 313 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02480 Viun-Chr6 29645720 29646953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02480 1 192 AP2-EREBP Transcription Factor Family AT5G18560 44.800 4.20e-51 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun6g02480 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02480 - - var:108341653 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05785 3 63058623 63060225 Viun6g02480 6 29645720 29646953 PCT