Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02473 ATGAAGACATGGAATTGTTTTGTCCGTTTGGGTCGCCATGCATCGAAAGTCACTGAGGAAGAGGAAGATGAAGAATACCTTAAAGAAGAAGAGGATGGTGTCGCCAGCACACGTCTGGTATCGCAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTGGCTGGACTAAACTGGCTCATACGATTGTATGAGAATGGGATAAATGGAATTCTGGCTGATGAAATGGGACTTGGTAAAACGTTGCAAACCATATCTTTGTTGGGTTATTTGCATGAGTTCAGAGGAATAAAAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTTCGTGCAATTAAGTTTCTTGGCAACCCTGAGGAAAGGAGACATATAAGAGAGGAACTTCTAGTTGCTGGCAAGTTTGATATCTGTGTCACCAGTTTTGAAATGGCAATCAAGGAGAAGTCTGTGTTGCGTCGTTTTAGTTGGCGTTACATAATTATTGATGAAGCTCATCGAATCAAGAATGAAAATTCCTTGCTGTCAAAAACAATGAGACTATATAGTACAAACTATCGCCTCCTTATTACTGGCACACCACTTCAGAATAATCTTCATGAACTCTGGTCTCTTCTCAACTTTCTTCTTCCCGAAATTTTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACCAACAGGAGGTTGTTCAACAATTACACAAGGTCCTTAGGCCATTTCTCCTTCGAAGGTTGAAATCAGATGTTGAGAAAGGGCTGCCACCGAAAAAGGAAACTATTCTTAAAGTAGGCATGTCCCAGATGCAGAAACAGTATTATAGAGCATTACTTCAGAAGGATCTTGAAGTTGTAAATGCTGGTGGTGAAAGGAAACGCCTCCTGAACATAGCTATGCAACTACGCAAATGTTGTAATCATCCATATCTTTTCCAAGGTGCTGAACCCGGTCCTCCCTACACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAGTTACTTCCTAAATTGAAAGAGCGTGATTCTAGGGTCCTTATATTTTCTCAGATGACGAGACTTCTAGACATACTTGAAGATTATTTAATGTTTCGTGGATATCAATATTGTCGCATTGATGGAAATACTGGTGGGGATGATCGAGATGCTTCCATTGATGCTTTCAACAAGCCAGGAAGTGAGAAATTTGTCTTCCTGTTATCTACTCGCGCTGGAGGTCTCGGAATTAATCTTGCTACTGCTGATGTTGTCATTCTGTATGACAGTGATTGGAACCCACAAGTTGACTTGCAGGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAGGAAGTTCAAGTTTTTCGTTTTTGTACTGAGTATACAATTGAAGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTTTGGTGATTCAGCAAGGGAGATTAGCTGAGCAGAAGACGGTAAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGGGCTGAAATGGTTTTCAGTTCCAAGGATAGTACAATTACAGATGAGGATATTGATAGAATTATTGCTAAAGGAGAGGAGGCAACTGCCGAGCTTGATGCCAAGATGAAGAAATTTACTGAAGATGCCATCAAATTTAAGATGGATGACACTGCTGAGCTTTATGATTTTGATGATGAGAAGGACGATAACAGATTTGATATTAAAAAAATTGTTAGTGAGAACTGGATTGAACCACCAAAAAGGGAGCGGAAGCGCAACTACTCAGAGTCCGAGTACTTCAAGCAAACAATGCGTCAAGGTGGTCCTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCCCAGTTGCATGATTTCCAGTTTTTCAACACACAGAGGTTGAGTGAGCTGTACGAAAAGGAAGTTCGCTGTCTCATGCAAGCACACCAGAAGAATCAGATAAAGGACTCAATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCGTTGACCGCCGAAGAGTTGGAGGAAAAAGAGCGCTTGCTAGAAGAGGGGTTTTCATCTTGGAGCCGGAGGGATTTTAATACATTCATTAGGGCCTGCGAAAAATATGGCAGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGAAAAACTGAGGAGGATGTTGAAAGATATGCGAAGGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGACAGAATTATTAAAAACATTGAAAGGGGGGAGGCAAGAATTTCTCGGAAAGATGAGATCATGAAAGCTATTGGGAAAAAGTTGGACCGGTACAAGAATCCTTGGCTAGAGTTAAAGATACAATATGGGCAAAACAAAGGGAAGTTGTACAATGAAGAATGTGACAGATTCATGATATGCATGGTTCACAAACTTGGCTATGGGAATTGGGATGAGTTAAAGGCGGCATTTCGAACTTCACCCTTGTTTCGATTTGATTGGTTTGTTAAGTCTCGCACAACTCAGGAATTGGCAAGAAGGTGTGACACCCTCATTCGTCTGGTAGAAAAGGAAAACCAAGAATATGATGAGAGGGAGAGACAAGCTCGCAAAGAGAAGAAACTTGCTAAAAACATGACCCCATCAAAGCGTGGTTTGGCAAGACAGACAGATAGTCCATCTTTGAAGAAGCGGAAGCAGTTAACAATGGATGATTACGCTAGCTCGGGGAAGAGAAGAAAATAA 2775 0.4079 MKTWNCFVRLGRHASKVTEEEEDEEYLKEEEDGVASTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPEERRHIREELLVAGKFDICVTSFEMAIKEKSVLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYSTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDDNRFDIKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRCLMQAHQKNQIKDSIDVDEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEDVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEYDERERQARKEKKLAKNMTPSKRGLARQTDSPSLKKRKQLTMDDYASSGKRRK 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02473 924 CDD DEXHc_SMARCA1_SMARCA5 47 267 IPR044754 GO:0005524
Viun6g02473 924 SUPERFAMILY Homeodomain-like 704 754 IPR009057 -
Viun6g02473 924 Gene3D - 789 892 - -
Viun6g02473 924 SUPERFAMILY Homeodomain-like 756 878 IPR009057 -
Viun6g02473 924 Gene3D - 51 266 IPR038718 -
Viun6g02473 924 MobiDBLite consensus disorder prediction 873 924 - -
Viun6g02473 924 FunFam Chromatin-remodeling complex ATPase 51 266 - -
Viun6g02473 924 Gene3D ISWI, HAND domain 602 700 IPR036306 GO:0003677|GO:0006338|GO:0031491
Viun6g02473 924 CDD SF2_C_SNF 351 476 - -
Viun6g02473 924 FunFam ISWI chromatin-remodeling complex ATPase CHR11 789 892 - -
Viun6g02473 924 MobiDBLite consensus disorder prediction 873 889 - -
Viun6g02473 924 SMART sant 701 750 IPR001005 -
Viun6g02473 924 SMART sant 803 864 IPR001005 -
Viun6g02473 924 SMART helicmild6 381 465 IPR001650 -
Viun6g02473 924 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 701 755 - -
Viun6g02473 924 Pfam HAND 614 696 IPR015194 GO:0003677|GO:0006338|GO:0031491
Viun6g02473 924 ProSiteProfiles SANT domain profile. 700 752 IPR017884 -
Viun6g02473 924 Gene3D iswi atpase 756 788 - -
Viun6g02473 924 Gene3D - 271 563 IPR027417 -
Viun6g02473 924 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 355 506 IPR001650 -
Viun6g02473 924 MobiDBLite consensus disorder prediction 900 924 - -
Viun6g02473 924 FunFam ISWI chromatin-remodeling complex ATPase CHR11 602 700 - -
Viun6g02473 924 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 227 IPR014001 -
Viun6g02473 924 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 34 911 - -
Viun6g02473 924 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 613 703 IPR036306 GO:0003677|GO:0006338|GO:0031491
Viun6g02473 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 548 IPR027417 -
Viun6g02473 924 Coils Coil 858 889 - -
Viun6g02473 924 Pfam SLIDE 758 868 IPR015195 GO:0003677|GO:0005634|GO:0006338
Viun6g02473 924 CDD SANT 704 748 IPR001005 -
Viun6g02473 924 SMART ultradead3 46 238 IPR014001 -
Viun6g02473 924 FunFam ISWI chromatin-remodeling complex ATPase CHR11 271 563 - -
Viun6g02473 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 265 IPR027417 -
Viun6g02473 924 Pfam Helicase conserved C-terminal domain 353 465 IPR001650 -
Viun6g02473 924 Gene3D - 701 755 - -
Viun6g02473 924 Pfam SNF2-related domain 63 330 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02473 Viun-Chr6 29579468 29586486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02473 22 492 RAD5 or RAD16-like Gene Family AT1G02670 26.486 6.14e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Viun6g02473 SNF2_N 5.5e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02473 K11654 - gmx:100782649 1766.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02473 6 29579468 29586486 Viun6g02473 6 29579468 29586486 ECH
Viun3g05793 3 63118172 63127253 Viun6g02473 6 29579468 29586486 PCT