Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02461 ATGACGATATTCTTGGCTCGATGTTGTGATGAGTTGTGCTTCGATTTCTTTATGGTTGAAAAAAATAAAAGAAAAATATTGATTCACCCCGCCTGTGGCGTGAAGGCAAGGGCGAAGCCTGGCCCAAGGGAGAATCTCCTCCGGTGCTTTATAAAGCGCAACCGCTCAACTCAAACGTACTATTTGTTTCTCAGTTTAACTAACACGCTAGCTGAAGATGGGAAGTTTCTTCTGGCTGCACGCAAGTGCAGACGTCCGACATGCACAGATTATATCATCTCTCTTGATGCAGATGATATGTCAAAGGGAAGCAACTCCTATGTCGGGAAACTAAGATCAAATTTTCTTGGAACAAAGTTCACAATCTATGACAGCCAGCCACCTCACTCGGGGGCAAGGATTATGAAAAGTCGCTCCACAAGGCTGGTGAATCTAAAACAAGTTTCGCCGAAAGTCCCTACAGGGAACTATCCAGTGGCTCACATCTCATATGAATTGAATGTGCTAGGCTCCCGGGGGCCTCGGAGAATGCATTGTGTCATGGATTCCATTCCTGCCACTGCAATTGAAGCTGGAGGAGTAGCTCCTACACAGACCGAGTTTTCTCTTAACAACATAGATATGTTTCCTTCTTTCCCTTTTTTCCGATCAAAATCAAATCGTGTAGAAAACACCATGTCCGGACCCCTGGTTGATCAAAAGGATGGGATGCTCGTGTTGAAAAACAAGTCTCCTAGGTGGCATGAGCAGCTCCAGTGTTGGTGCTTAAACTTTCATGGCCGGGTGACAATTGCCTCAGTTAAAAACTTTCAGCTGGTAGCTTCTGCGGAAAATGGACCTGCTGGACCAGAGCATGATAAGATTATCCTCCAATTTGGAAAAGTTGGGAAGGATTTGTTTACGATGGATTACCGATACCCTATTTCGGCATTTCAGGCCTTTGCGATGTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 987 0.4519 MTIFLARCCDELCFDFFMVEKNKRKILIHPACGVKARAKPGPRENLLRCFIKRNRSTQTYYLFLSLTNTLAEDGKFLLAARKCRRPTCTDYIISLDADDMSKGSNSYVGKLRSNFLGTKFTIYDSQPPHSGARIMKSRSTRLVNLKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVMDSIPATAIEAGGVAPTQTEFSLNNIDMFPSFPFFRSKSNRVENTMSGPLVDQKDGMLVLKNKSPRWHEQLQCWCLNFHGRVTIASVKNFQLVASAENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAMCLSSFDTKIACE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02461 328 Pfam Tub family 39 323 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 285 304 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 156 183 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 107 131 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 258 274 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 91 107 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 240 257 IPR000007 -
Viun6g02461 328 PRINTS Tubby superfamily signature 306 328 IPR000007 -
Viun6g02461 328 FunFam Tubby-like F-box protein 34 328 - -
Viun6g02461 328 ProSitePatterns Tub family signature 1. 258 271 IPR018066 -
Viun6g02461 328 PANTHER TUBBY-RELATED 39 326 - -
Viun6g02461 328 SUPERFAMILY Tubby C-terminal domain-like 38 328 IPR025659 -
Viun6g02461 328 Gene3D Tubby Protein; Chain A 34 328 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02461 Viun-Chr6 29523189 29527332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02461 39 328 TUB Transcription Factor Family AT2G47900 73.038 9.28e-157 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun6g02461 Tub 8.5e-113 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02461 K19600 - gmx:100778346 577.785