Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02448 ATGAACCAGTACCACATCTACGAAGCCATCGGTCGTGGCAGATACTCCACCGTTTACAAAGGCAGGAAGAAGAAGACTATCGAGTATTTCGCCATCAAGAGCGTTGATAAATCGCAGAAAACTAAGGTCCTCGAAGAGGTCAGGATTCTTCACACGTTGGATCATATAAATGTGCTGAAGTTTTATGATTGGTACGAAACTTCTGCTCACCTATGGTTGGTTTTAGAGTACTGCGTTGGAGGGGATCTGATCTCCATATTACGACAGGATAGTAAACTTCCCGAAGACTCTGTTCACGACCTTGCGTATGATCTAGTGAAAGCTTTACAGTTTTTACATTCAAATGGAATAATTTATTGCGACCTGAAACCATCAAATATTCTACTAGATGAAAATGGATGCGCAAAGCTATGTGATTTTGGATTGGCTAGGAAGTTGAAAGATATATCAAAAGCTCCTTCTTCCTCGTTACCACGGGCAAAACGCGGAACACCTTCTTACATGGCTCCGGAGCTTTTTGAGGATGGTGGAGTCCATTCTTATGCTTCTGACTTCTGGGCACTAGGCTGTGTACTATATGAATGTTATGCCGGGAGACCACCTTTTGTGGGAAGAGAATTCACGCAGCTTGTAAAATCCATCATTTCAGACCCGACTCCACCTCTCCCTGGTAATCCAAGTCGACCTTTTGTTAATTTAATTAATTCCCTGTTGGTAAAGGATCCAGCTGAAAGAATACAGTGGCCTGAGCTTTGTGGACATGCCGTTTGGAGAACAAAAATTCCTCCGGTGCCTCTGCCTGCTCAACCTGCATTTGATGATATGGTAGAGCTACACACTAGACCTTGCTTATCAGAACGAAATGGAGATAAATCTTCGCATAACAGGACACCTCCCAAATATCGTGAAAAAGATGTCAAAGGGGTGTTGAAGAAGGACGAGAACTCTGTTTTAGGATCTAGAGGCATTGAGACACCAACAAGGGCAACACCAAATGGCCCTAGAACTCAGATAAAAGGGTCTGGTAGAACAAATGATGTAAAGAAGAAAGATCATTCCAATATTAGCAAGGGCGTCAATCTATTGAGATTGTCAAGAATAGCAAAAACAAATTTACAGAGGGAAAATGAGAAAGAAAACTATCGACGCCCCTTGCCTAATAACTCTGAGAATGATTCTGAAGTTAAAATTGAGAACACTGACATGGAACTTGATTTTAATGAGAATACCGAAGATGATACACATGAAGAAACTGATGGCAACGAACAAACAACTTCTGTGCCTGGTGAGAAAATAGACAATCATTTTCTGAATCAGGGAAAAACAGAGGAGATTGAAAATACTGCACACCAGTTGGATACCCCATCTGCTGTTAACCCTCCAGTCTCAGATGATCCAAGATCATTTGACCATGAATCAACTCTTGACCATCCTGACATTTCTGGTATTTCTCCCAGTGTGAGCCCTCAGGTGAAGAAGAATAGAGCTAAAGAAGACTCAGGATCTGCCCTTGACTCTGATTCGTCAAGGTTGACAAACAACCTTTCCCAGGTTCTTTGGCATCCATCTGATCTCTCAGTCAGACCTGTAATGCCTAGCAGAAAAGTTGATAAAGTCTCAGAAGTCATTCCTTCACTCCCTTTTGAGGCATTGCAAGCGTCTGATTTTGTTAAGATGCCTAAAGAGCAATTGGAGGCAGTCCACAACCGAATATTAGCCATTTTGAACGGAAATACCAGCATTGGAGAGAAACAGAATGTGATTAGATACCTCGAGATGTTGAGCATTAATGCTGATGCTGCTAATGTCTTGACCAATGGGCCAATTATGCTCACGCTTGTAAAATTGCTTCGTCAATCCAAGGCATCAGCTTTGCGTGTTCAACTTGCTTCATTGATTGGTCTGTTGATTAGGCACTCCACTTTTGTTGATGACAGTTTGGCTAATTCTGGAATTTTAGGTGCACTGACTGATGGCCTTAGAGACAGGCAGGAAAAAGTAAGGAGGTTTTCCATGGCTGCTTTGGGTGAGTTGCTATTTTATATATCCACTCAAAACGCAGACTGCAAGGATAACAATCAACTTGAATCTCCATCAAAGGACAATAGGACAACATATGGTTGGCAGGTTCCAAATTCGTTAATTTCGCTTGTGTCATCAATGTTGAGGAAGGGCGAGGATGATATAACTCAATTGTATGCATTGAGAACAATTGAAAATATTTGCAGTCAAGGAGGGTTCTGGGTGGGGCGATTGGCTAGTCAAGATGTTTTTAGTAATCTCTGTTATATCTATAGGGCGGCAGGGAAACAAGAGAGTATGAGGCTCACTGCAGGATCATGCTTGGTGCGCCTTGTTCGTTTTAATCCTCCTAGCATTCAGTCTGTTATTGAGAAACTCTCATTCAAAGACCTAGCTTCTGCTCTTGTAAAGGGAAGTCCAAGAGAGCAGCAAATCAGCTTAAATCTTCTTAACATTTCAATGCTTGGGAGTCACTTATTCACAAATATTGGAAGATACCTTATACAACTTGCCGAGGATAAAAATCTGATCCCAAGTCTTTTGGCTCTTGTTGAGCAAGGTAGTGAAGTTTTAAGAGGGAAGGCACTAGTTCTTGTGGCTCTCCTCTGTAAGCATGGCAGGAGGTGGCTTCCACACTTCTTCTGTAGTCAAAAGTTGCTTTCTGTTGTGGACAGGCTGGGAAAAGAGAAAGATGCCTATGTGAGGCAGTGTTTGGATGCATTTGTGCATATTGTGGCATCCAGTATTCCAGGTTTATTGGATATAATAACAGGGGATGTCCAGCAAATGATGGGAGGAAGGCGCCATGGACACATCTCTGCCCTTACCAGCAGATCTCCAAAAGCCAACATTCATTTGTTTCCTGTTGTCCTTCATCTTCTTGGAACTTCAACTTTTAAGCACAAAGTCGTGACACCACATGTCGTACTTCAGTTGGCGAATCTAATTAAACTTGTGGAGACACCATTTCAGGGAAGAGATGACTTCCAAATAACCCTTCTTCGAATTTTCGAGTCTCTCACAGAGGAATCTCCTATGATTCTTGGCAATGCGGACATTTTCATACGTGAAATCCTCCCTAGTTTGACTGTTCTCTACAAGGGTAACAAGGATGGTGATGCCAGGTTTTTGTGCCTTAAAATTCTTTTTGATGTGATGATCATTCTTTTGAGTGAACCAATTGAAGAAGAGCAACGATTAAAGGATCTGAAATTCATATCAAATACCCGTTTTCTTCCTCTCTATCCAACCTTGATTGAAGATGAAGACCCTATTCCTATTTATGCCCAGAAACTTCTTGTTATGCTACTGGAGTTCAGTTTTATTAGAATTCCAGACATTCTACACATGAAGGCAATTTCACAATGCTTTGAGTTCTTGCTTGGTGATCTCTCAAATGCAAATGTGAATAATGTTAAACTGTGTCTTGCTCTAGCTTCTGCTCCCGAGATGGAGTCGAAATTACTCTCTCATTTAAAGGTGGTTAGAAGGATTGGCAACTTTCTTGAGTTTGTACATGCAAAGGGCATGGAAGATTTGCTGGAACCCACTCTTGGGCTTTGTAGGGCTTTTATAGCACGTTCAGTAGGCTGTACAAAAGGCTTGAGCAGCGCAACAGAACCAACTCTCTTAGGTGACTATCCTCCCGAGTTGAGTGGTGGTGCGGTTGATCCCCAGCAATGCATAAAAGATATCGCAGACTTTGGAAGCAATTTTGGCGTCTTGCTAGAGTTGAGTGCCTCTGCAGAAACCAGTATTGCCGATATAGCTTCTGAATGTGTTGTTTTACTGTTCAAGGCAGCTCCTAGAGAAGCCACCACTGGTATACTAACCAATCTTCCCAAAGTCACTGTGATCCTAGAGAGCTGGAACAGAGGCATTCCTCACTTGATGGTGCAGCGAATGCTTCATTCTTTAGGTTATGCTTGCAAGCAATACTTACTGCATGCAATGATATTATCAATATCTAAATCAGAGATTTCAAGAATTGAAGTTGTAGTTTCTGAAATCAAGAGTTCAGGTGTACCACTCTTAGCCAAAACTGCTGGGCTAGCAGCCTTGGAGTTGCAGCGGCTGCCTCGCTGCATTTGA 4113 0.4216 MNQYHIYEAIGRGRYSTVYKGRKKKTIEYFAIKSVDKSQKTKVLEEVRILHTLDHINVLKFYDWYETSAHLWLVLEYCVGGDLISILRQDSKLPEDSVHDLAYDLVKALQFLHSNGIIYCDLKPSNILLDENGCAKLCDFGLARKLKDISKAPSSSLPRAKRGTPSYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPPLPGNPSRPFVNLINSLLVKDPAERIQWPELCGHAVWRTKIPPVPLPAQPAFDDMVELHTRPCLSERNGDKSSHNRTPPKYREKDVKGVLKKDENSVLGSRGIETPTRATPNGPRTQIKGSGRTNDVKKKDHSNISKGVNLLRLSRIAKTNLQRENEKENYRRPLPNNSENDSEVKIENTDMELDFNENTEDDTHEETDGNEQTTSVPGEKIDNHFLNQGKTEEIENTAHQLDTPSAVNPPVSDDPRSFDHESTLDHPDISGISPSVSPQVKKNRAKEDSGSALDSDSSRLTNNLSQVLWHPSDLSVRPVMPSRKVDKVSEVIPSLPFEALQASDFVKMPKEQLEAVHNRILAILNGNTSIGEKQNVIRYLEMLSINADAANVLTNGPIMLTLVKLLRQSKASALRVQLASLIGLLIRHSTFVDDSLANSGILGALTDGLRDRQEKVRRFSMAALGELLFYISTQNADCKDNNQLESPSKDNRTTYGWQVPNSLISLVSSMLRKGEDDITQLYALRTIENICSQGGFWVGRLASQDVFSNLCYIYRAAGKQESMRLTAGSCLVRLVRFNPPSIQSVIEKLSFKDLASALVKGSPREQQISLNLLNISMLGSHLFTNIGRYLIQLAEDKNLIPSLLALVEQGSEVLRGKALVLVALLCKHGRRWLPHFFCSQKLLSVVDRLGKEKDAYVRQCLDAFVHIVASSIPGLLDIITGDVQQMMGGRRHGHISALTSRSPKANIHLFPVVLHLLGTSTFKHKVVTPHVVLQLANLIKLVETPFQGRDDFQITLLRIFESLTEESPMILGNADIFIREILPSLTVLYKGNKDGDARFLCLKILFDVMIILLSEPIEEEQRLKDLKFISNTRFLPLYPTLIEDEDPIPIYAQKLLVMLLEFSFIRIPDILHMKAISQCFEFLLGDLSNANVNNVKLCLALASAPEMESKLLSHLKVVRRIGNFLEFVHAKGMEDLLEPTLGLCRAFIARSVGCTKGLSSATEPTLLGDYPPELSGGAVDPQQCIKDIADFGSNFGVLLELSASAETSIADIASECVVLLFKAAPREATTGILTNLPKVTVILESWNRGIPHLMVQRMLHSLGYACKQYLLHAMILSISKSEISRIEVVVSEIKSSGVPLLAKTAGLAALELQRLPRCI 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02448 1370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Viun6g02448 1370 SUPERFAMILY Protein kinase-like (PK-like) 1 276 IPR011009 -
Viun6g02448 1370 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02448 1370 Gene3D Transferase(Phosphotransferase) domain 1 1 304 - -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 320 341 - -
Viun6g02448 1370 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Viun6g02448 1370 SUPERFAMILY ARM repeat 567 920 IPR016024 -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 450 509 - -
Viun6g02448 1370 CDD STKc_ULK4 3 257 - -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 371 385 - -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 282 318 - -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 282 358 - -
Viun6g02448 1370 FunFam Aurora kinase A 1 81 - -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 342 356 - -
Viun6g02448 1370 PANTHER SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED 1 1367 IPR044591 GO:0000911|GO:0000914|GO:0008017
Viun6g02448 1370 Pfam Protein kinase domain 4 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02448 1370 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02448 1370 MobiDBLite consensus disorder prediction 404 418 - -
Viun6g02448 1370 MobiDBLite consensus disorder prediction 371 433 - -
Viun6g02448 1370 Gene3D - 556 917 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02448 Viun-Chr6 29476435 29483656 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02448 1 246 AGC Kinase Gene Family AT1G45160 34.058 5.11e-36 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_ULK4 Viun6g02448 Pkinase 6.5e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02448 6 29476435 29483656 Viun6g02448 6 29476435 29483656 ECH