Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02443 ATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCAGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCAGCAAGGACATATAATGAACAAATTAAGCCACATAAAGATGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTACTGAACAAGAGCAACAAGATTCAAATGATGATCAAATAACTCCGGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCAACAAAAGCGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCTGTTCAACGACAAAACAGACAGATGCAAGGCCAGCAGAGTCTGCATCCAGAGTCAATAAGTGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATAATTATTGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGGTAACCTTTCTTTTTGGTTTTTTCGTGACGAAATGATATATTGTTCGAATTTTAATTTCATATATGTATTTGTGTTGTGTGCAGCAATTAAGGAGTACATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTGGCTTTAACTGTGCATCTGTTTTATACAATGCTGCATTTGATGGCCATATATGCCATACTTCTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGCCATCAACTACGCATATATCCAGTTTGTCACTTGGAGGCTTCAAGTCTCTCATGATGATAACCCAGTATGA 1029 0.3975 MASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEQIKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRTEQEQQDSNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSNKSDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQMQGQQSLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILGNLSFWFFRDEMIYCSNFNFIYVFVLCAAIKEYIWTYAALEFALVALTVHLFYTMLHLMAIYAILLSSVLGFGIAMAINYAYIQFVTWRLQVSHDDNPV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02443 342 ProSiteProfiles Zinc finger RING-CH-type profile. 98 159 IPR011016 GO:0008270
Viun6g02443 342 SMART ringv_2 105 153 IPR011016 GO:0008270
Viun6g02443 342 Pfam RING-variant domain 106 152 IPR011016 GO:0008270
Viun6g02443 342 CDD RING_CH-C4HC3_MARCH 106 153 - -
Viun6g02443 342 SUPERFAMILY RING/U-box 102 156 - -
Viun6g02443 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 161 IPR013083 -
Viun6g02443 342 ProSiteProfiles Zinc finger RING-type profile. 106 153 IPR001841 -
Viun6g02443 342 PANTHER OS02G0165000 PROTEIN 270 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02443 Viun-Chr6 29448134 29451792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02443 44 209 C3H Transcription Factor Family AT2G37950 26.667 1.29e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02443 - - vun:114188987 670.233