Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02442 ATGCAAGCTCCTCAACCATCACTCACTGATGAAGCTCCCGAGATTTCCCATCAGGGTGTCCCACTGCGAAACAAAGAGGTTTCAGATAGTGGACCCAATGGTAGGCGCCCTGATATTTCACTTCAAGTTCCTCCTAGACCTATAGGGTTTGGGAGCACTAGTGGTGGGAGGGTTCTGGACCATTCTCAAAGTTTCACCAAAGGGATATCATCATCAAGAGGCTTCTTGCGGGCCTTGAGCTTCAAAAGAAAAGGAAATGTAGGGGATGGGGAAAGAAGCAGCCTACTTAGTTCAGACCCCAAGACAGCTTCAGACAGTTCTAATATGGCCTCCATATCTGAAATTGCATGGAAAAGATGCACTTCTCTTCCTGTTACACCAGCATCAAATCTGTCTCCTTCAGTTGCTACACCCATTTCAGCAAGGACATATAATGAACAAATTAAGCCACATAAAGATGTTGATCGTTCTAAGGTTTCAAGGTCCCTTTCTGTACCTGGACGAAATGTTGTTATTGTAAGATCTGTCTCTTTTTCTACCCGTACTGAACAAGAGCAACAAGATTCAAATGATGATCAAATAACTCCGGTGCCAGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCAGTGTGCAGGATATGTTTTGATGTGTGTGATGAAAGGAATACCTTTAAAATGGAATGCAGTTGCAAAGGTGACCTGAGATTGGTGCATGAAGAATGTTTAATTAAATGGTTTAGCAACAAAAGCGACAAGAAATGTGATGTATGTAGGCAAGAGGTTCAGAATTTACCTGTAACTTTGCTTCGTGTGACAAGCTCTGTTCAACGACAAAACAGACAGATGCAAGGCCAGCAGAGTCTGCATCCAGAGTCAATAAGTGCATGGCAAGACTTTGTGGTGCTTGTCCTGATCAGCACAATATGCTACTTTTTCTTCCTTGAACAGCTACTGCTTCCTGAATTGAAGACTCAAGCTATAATTATTGCAGCACCATTTGCCTTTACCTTGGGCCTCCTAGCTTCTATTTTTGCAGTCATCCTGGCAATTAAGGAGTACATATGGACATATGCTGCTCTCGAGTTTGCCCTTGTGGCTTTAACTGTGCATCTGTTTTATACAATGCTGCATTTGATGGCCATATATGCCATACTTCTTTCATCAGTTTTGGGTTTTGGAATTGCTATGGCCATCAACTACGCATATATCCAGTTTGTCACTTGGAGGCTTCAAGTCTCTCATGATGATAACCCAGTATGA 1269 0.4263 MQAPQPSLTDEAPEISHQGVPLRNKEVSDSGPNGRRPDISLQVPPRPIGFGSTSGGRVLDHSQSFTKGISSSRGFLRALSFKRKGNVGDGERSSLLSSDPKTASDSSNMASISEIAWKRCTSLPVTPASNLSPSVATPISARTYNEQIKPHKDVDRSKVSRSLSVPGRNVVIVRSVSFSTRTEQEQQDSNDDQITPVPVEVTADEEIPEEEAVCRICFDVCDERNTFKMECSCKGDLRLVHEECLIKWFSNKSDKKCDVCRQEVQNLPVTLLRVTSSVQRQNRQMQGQQSLHPESISAWQDFVVLVLISTICYFFFLEQLLLPELKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVALTVHLFYTMLHLMAIYAILLSSVLGFGIAMAINYAYIQFVTWRLQVSHDDNPV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02442 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Viun6g02442 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
Viun6g02442 422 SUPERFAMILY RING/U-box 210 264 - -
Viun6g02442 422 PANTHER OS02G0165000 PROTEIN 60 417 - -
Viun6g02442 422 MobiDBLite consensus disorder prediction 86 108 - -
Viun6g02442 422 ProSiteProfiles Zinc finger RING-type profile. 214 261 IPR001841 -
Viun6g02442 422 MobiDBLite consensus disorder prediction 1 62 - -
Viun6g02442 422 MobiDBLite consensus disorder prediction 91 108 - -
Viun6g02442 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 269 IPR013083 -
Viun6g02442 422 CDD RING_CH-C4HC3_MARCH 214 261 - -
Viun6g02442 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02442 Viun-Chr6 29447716 29451792 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02442 152 321 C3H Transcription Factor Family AT2G37950 26.087 1.22e-09 56.2