Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02437 ATGGAACCCCAACAATCTCTCCCTCCCATGGACGATTCCGAAGACCCTTCCTCCATTTGGGACTTCTCCTACCTCCTCGACTTCAACCTCGACGAAGACCACACCAATAACTCTCTCCCTTTCTCTTCTCCCTTCAACGACGCTCCCGAGATCCCTAACGACCGGGTCCGAAAGCGTGACCCCCGACTCACCTGCTCCAATTTTCTCGCGGGTCGGGTCCCCTGCGCCTGCCCCGAACTTGACGCCAAGCTTGAGGACGAGGGTTTGCCTGGCAAGAAACGCGCGCGCACCGCTCGTGCCTCCTCATCCGCTCGATGCCAGGTCCCTGGTTGTGAGGTCGATATCTCCGAACTCAAAGGCTATCACCGCCGACACAGAGTCTGCCTCCGGTGCGCCAATGCCAGCACTGTTGTCCTCCACGGCGAGCCCAAGAGATACTGTCAGCAGTGCGGGAAGTTTCATGTTTTGTCGGATTTCGATGAAGGGAAACGAAGTTGCAGAAGGAAGTTAGAACGGCATAACACGCGGAGGCGGAGAAAGCCCCTGGTGGACTCTGGAGGTGCTGCTATCGCCGAACTTGAGGCCGTTACTCAGAATGAGGAAAACAATTATGATGCGGAAGCAGGAAAAGATTGTTCAAATTTGAGTAATGAGATCAACGACGTAGTAGTGTTGCCAGATCATGGAGATGAACCTGTTCCTATTTTGAGATCAGCTCCTGATGCTCAGAATGTTAATAGTGACAGTGTTGTGTCTTTGCCTGTTTCGGGTGAAACTCGAGTGAATAGTGGGAACACTTCTAATTCGCCTTCTTATTGTGACAATAAGAGTGCCTACACGTCTATGTGCCAAACAGGTCGGATTTCGTTTAAGCTTTATGATTGGAATCCAGCAGAATTTCCTAGAAGGCTACGACACCAAATATTCCAATGGCTGGCAAGTATGCCTGTGGAGTTGGAGGGTTATATCCGCCCTGGGTGCACCATTTTGACAAGTTTTATTGCAATGCCTAACATTATGTGGATAAATTTACGGAAAGACTCTTTGGAATATGTCAACGAACTTGTTGACCCTGGAAAGATGCTATCAGGAAGAGGGACTGCACTAGTTCATCTGAATGACATAGTCTTCCGTGTTATGAAAGATGGAACTTCTGTGACAAAAGTCGAGGTAAACTTGCAGGCACCCAGGCTTCATTATGTTCACCCTACATGCTTTGAGGCTGGCAAACCTATGGAGTTTGTTGCTTGTGGAAGTAACTTACTGCAGCCTAAATTCCGGCTTCTTGTATCGTTTTCTGGAAAGTATCTGAAATGTGAGTATTGTGTACCGTCTCCACATCACTGGACTCAAGAAAATATTTCTTGTGCTTTTGACAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAAGTCTCTCTGGGCCTGCATTTATTGAGGTGGAGAATGAATCCGGTTTGTCAAACTTTATTCCTGTACTCATTGCGGATAAAGAAACTTGTTCTGAAATGAAGACACTGCAGCAAAAATTAGATACATCTCTCCTTTCTAATCAATTCCGGTCTGCATTAGGTCGATCTATCTGCAGTTCGTGTGAAACATGTACACTTAGCCACACATCATCAGACTTACTTGTAGATATAGCATGGTTGCTCAAGGACACCACTTCAGAAAATTTTGACAGAGTGATTACAGCTTCACAAATCCAAAGATATTGTCATTTGTTGGATTTTCTGATGTGCAATGAATCAACAGTCATGTTGGAAAAAATATTACCAAATTTGATAATCTTGACAGAAAGCATGAAATCCAATTGTGTGATTAATACAACGAGTGATGTTGATACAAGGCAACTCCTGAATCACATACATAATGCTGAAATTGCCATATTTCAGAAACATCAGAAAAATGGAAGTATAATTGTGCAGCCTGAAATGGAAGGCTTTAATAACAAGATCTCAGTTGCTATCAACAGTCAGGGTATCCTGTCAAGAGCAGATGCAAAGTGGGGAGTACTGAAAAATCTAACTTGTAGTAACAAAAATGAAAGAATACCTCTTTTAAAGAGAGACATTATAATGAATGTGGAAGAGTTGCCTGAAAGATATGGTGGTGGATGTTTAGGCAGCAGGGGGTTGTTGAGCCCTCGACCTGCTATTTTTGTGATGGTTTCGATTGCTGTTTGTCTTGGGGTTTGTGTAGCTGTCCTTCATCCAGGAGGGGTTACTGAGTTTGCAGTATCGGTTAGAAGGTGTTTGTTTAACTATTAG 2274 0.445 MEPQQSLPPMDDSEDPSSIWDFSYLLDFNLDEDHTNNSLPFSSPFNDAPEIPNDRVRKRDPRLTCSNFLAGRVPCACPELDAKLEDEGLPGKKRARTARASSSARCQVPGCEVDISELKGYHRRHRVCLRCANASTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRKPLVDSGGAAIAELEAVTQNEENNYDAEAGKDCSNLSNEINDVVVLPDHGDEPVPILRSAPDAQNVNSDSVVSLPVSGETRVNSGNTSNSPSYCDNKSAYTSMCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTSFIAMPNIMWINLRKDSLEYVNELVDPGKMLSGRGTALVHLNDIVFRVMKDGTSVTKVEVNLQAPRLHYVHPTCFEAGKPMEFVACGSNLLQPKFRLLVSFSGKYLKCEYCVPSPHHWTQENISCAFDNQLYKIYVPHTEESLSGPAFIEVENESGLSNFIPVLIADKETCSEMKTLQQKLDTSLLSNQFRSALGRSICSSCETCTLSHTSSDLLVDIAWLLKDTTSENFDRVITASQIQRYCHLLDFLMCNESTVMLEKILPNLIILTESMKSNCVINTTSDVDTRQLLNHIHNAEIAIFQKHQKNGSIIVQPEMEGFNNKISVAINSQGILSRADAKWGVLKNLTCSNKNERIPLLKRDIIMNVEELPERYGGGCLGSRGLLSPRPAIFVMVSIAVCLGVCVAVLHPGGVTEFAVSVRRCLFNY 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02437 757 Pfam SBP domain 106 180 IPR004333 GO:0003677
Viun6g02437 757 Gene3D - 97 167 IPR036893 GO:0003677|GO:0005634
Viun6g02437 757 ProSiteProfiles Zinc finger SBP-type profile. 103 180 IPR004333 GO:0003677
Viun6g02437 757 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 69 579 IPR044817 GO:0003677
Viun6g02437 757 SUPERFAMILY SBT domain 104 181 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02437 Viun-Chr6 29390039 29398911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02437 8 751 SBP-box Gene Family AT5G18830 46.918 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun6g02437 SBP 1.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02437 - - gmx:100776034 1244.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02437 6 29390039 29398911 Viun6g02437 6 29390039 29398911 ECH