Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02427 ATGAACGATGAACGAGAACCAACAGCTTCCTCGAGCAATGGCGTCCCCAGAAAACAAGTAGTTGAAAGGGATAAATCTATTTTTAGAGGCAGGCGTCCACGAACTGGGTTTTCTGATTCATTCTCAAGTATTGAATTGGAAACAATAGACCATGATGAGGGCGGAGCACCTGAGCACTCTCCTAGGAGTCAAGGGTCTGAAACCCCAAGTTCAAGGACCAGCACTTCAGATTCGGAGGGTCAGGGGTCTTTAGCAGTGAATTCACCTAATGCTAATAACCAATGGCGTGGTTTCTTCAAGCTACTCAAGAAAGGATCCCAAATGCCTTTCCAAACTTTTCATCCACTTAAAAATGTTCCAAAGCTCACAAGAAGAAAAAGCAAGAGAATCAGGGAGGACATGTGTCCATCTTTGAATTCTCCAGCTCTTCGCTCATCTTTTGACAGTGAGTTTGGTTACTTAAAATCTTCATGGAAAAACTTCACTCTCGCAGAGATCATGACTGCAACAAACGACTTTAGCCAAGCTAATTTGATCGGGGAGGGAGGCTATGCGGAGGTTTATTTAGGCAAATTGGAAGATGGAAATTTTGTTGCCATTAAACGGTTGACAAGAGGGAACCAAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGCATTATAGTACATGTGGATCATCCCAATATAGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATGTTTCTTGTTCTTCAATTGTCTCCACATGGTAGCTTGTCATCTATACTTTATGGACCTAGAGAGAAGCTGAATTGGAGCCTCAGATATAAGATTATTTTGGGGACTGCTGAGGGCCTGCGCTATCTGCATGAGGGGTGCCAAAGAAGGATCATTCACAAAGACATTAAGGCTTCTAATATTTTGCTCTCGGAGGATTTTGAGCCCCAGATATCTGATTTTGGGCTTGCAAAGTGGTTACCTGACCAATGGACTCATCATACTGTCTCCAAAGTGGAAGGCACATTCGGATACCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAGACAGATGTGTATGCTTATGGTGTGCTATTATTGGAGCTCATTACTGGTCGACAAGCTTTGGATAGCTCACAGAGAAGTCTGGTGATGTGGGCAAAACCTCTGCTATCTGCAAATAATATCAAAGCCCTAGTCGATCCAGTTTTGGCTGATGCTTACGATGCAGGGCAGATGGAACTTGTAACCTTAACAGCTTCTCTATGTGTAGACCAGTCTTCGATTCAGCGACCAGATATGAGCCAGGTGTTGGAGATACTAAAAGGGGAAGAAGATATCATAAGAATCATGAAAGAACGGACGAAGGTAAAACTTCAGAGGACATACTCTGAAGAACTGTTTGATGCAGAAGAGTACAACTCAACCAAGTTTTTGAATGAGAGGGATCGACATATGGAGACTATTCTAGGCTCAGCTACAGATGAATGA 1482 0.4278 MNDEREPTASSSNGVPRKQVVERDKSIFRGRRPRTGFSDSFSSIELETIDHDEGGAPEHSPRSQGSETPSSRTSTSDSEGQGSLAVNSPNANNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDMCPSLNSPALRSSFDSEFGYLKSSWKNFTLAEIMTATNDFSQANLIGEGGYAEVYLGKLEDGNFVAIKRLTRGNQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRYKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQRSLVMWAKPLLSANNIKALVDPVLADAYDAGQMELVTLTASLCVDQSSIQRPDMSQVLEILKGEEDIIRIMKERTKVKLQRTYSEELFDAEEYNSTKFLNERDRHMETILGSATDE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02427 493 Gene3D Transferase(Phosphotransferase) domain 1 250 462 - -
Viun6g02427 493 SUPERFAMILY Protein kinase-like (PK-like) 158 455 IPR011009 -
Viun6g02427 493 MobiDBLite consensus disorder prediction 61 91 - -
Viun6g02427 493 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 143 247 - -
Viun6g02427 493 MobiDBLite consensus disorder prediction 1 91 - -
Viun6g02427 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Viun6g02427 493 MobiDBLite consensus disorder prediction 18 32 - -
Viun6g02427 493 Gene3D Phosphorylase Kinase; domain 1 138 247 - -
Viun6g02427 493 PANTHER OS08G0249100 PROTEIN 47 472 IPR046958 -
Viun6g02427 493 SMART serkin_6 173 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02427 493 ProSiteProfiles Protein kinase domain profile. 173 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02427 493 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 250 452 - -
Viun6g02427 493 Pfam Protein tyrosine and serine/threonine kinase 176 436 IPR001245 GO:0004672|GO:0006468
Viun6g02427 493 ProSitePatterns Protein kinases ATP-binding region signature. 179 201 IPR017441 GO:0005524
Viun6g02427 493 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02427 Viun-Chr6 29340596 29344180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02427 144 444 Receptor kinase-like Gene Family AT1G53420 39.482 4.74e-69 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Viun6g02427 PK_Tyr_Ser-Thr 1.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02427 - - gmx:102670300 828.935