Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02407 ATGGGTTGTGTCCATGGCAAGTGCTGTACCCGTTACCCTTCACCATCAGTGGGTGGTTCCAGGGACTTCAGGGAACTTGGCCCTTACAGTACCCAGAGGAAGCACATTCTCACTCAGAGTTCGCTGCAATTTGTTCCTGTTCCTTCCCATAACTTCACTTTAGAATACTCTGTGCTCACTCAGAGGGGGTACTATCCTGATTCACCTGATAAAGAAAACCAGGATAGTTTCTGCATTAGGACACAGTTCCAAGGTAACCCGAGTGTCCATTTCTTCGGTGTTTATGATGGGCATGGCGAATTTGGTGCCCAGTGTTCAAATTTTGTTAAGGATAGATTGGTAGAAAATTTGTCAAGTGACTTTACATTGTTGGAGGACCCTGTTAAGGCTTACACTTCTGCTTTCTTGACCACAAATGAGGACTTGCATAAGAATGAGATTGACGATTCCTTGAGTGGCACCACTGCAATTACGGTGCTCGTCATCGGGGACACCCTTTATGTTGCTAATGTTGGTGATTCGAGAGCGGTGTTGGCTGTTAAGGATGGGAACCGGGTTGTTGCTGAGGACTTGTCCACTGATCAGACACCATTTAGGAGAGACGAATATGAGAGAGTGAAGCTTTGTGGGGCAAGGGTTTTGAGTGTTGATCAGGTGGAAGGGCATAAGGATCCCGATATCCAGACTTGGGGTGATGAAGAGAGTCAGGGTGATGATCCTCCTAGGTTGTGGGTTCAGAATGGGATGGTGCCTGGAGCTGCATTTACAAGGAGTGTAGGGGATATGTTGGCTGAGACTATCGGTGTAATTGCTGTTCCTGAGGTCTCAACGGTTCAGCTTACACCTAATCATCTTTTCTTTGTTGTTGCAAGTGATGGGGTATTTGAGTTCCTATCCAGCCAAACTGTTGTTGATATGGCAGCAAGTTATTCCGATCCCCGTGATGCATGTGCTGCCATTGCTGGAGAGTCATATAAACTATGGTTAGAACATGAGGGCCGAACTGATGATATAACAATTATTATTGTTCAGATCAAAGGCCTGTCTAATGTACATCTGGACTTGGATCAGGAGAGGTCAATGTCAGCACTGTAA 1095 0.4594 MGCVHGKCCTRYPSPSVGGSRDFRELGPYSTQRKHILTQSSLQFVPVPSHNFTLEYSVLTQRGYYPDSPDKENQDSFCIRTQFQGNPSVHFFGVYDGHGEFGAQCSNFVKDRLVENLSSDFTLLEDPVKAYTSAFLTTNEDLHKNEIDDSLSGTTAITVLVIGDTLYVANVGDSRAVLAVKDGNRVVAEDLSTDQTPFRRDEYERVKLCGARVLSVDQVEGHKDPDIQTWGDEESQGDDPPRLWVQNGMVPGAAFTRSVGDMLAETIGVIAVPEVSTVQLTPNHLFFVVASDGVFEFLSSQTVVDMAASYSDPRDACAAIAGESYKLWLEHEGRTDDITIIIVQIKGLSNVHLDLDQERSMSAL 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02407 364 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Viun6g02407 364 Pfam Protein phosphatase 2C 73 320 IPR001932 -
Viun6g02407 364 CDD PP2Cc 71 345 IPR001932 -
Viun6g02407 364 SMART PP2C_4 51 343 IPR001932 -
Viun6g02407 364 SUPERFAMILY PP2C-like 44 347 IPR036457 -
Viun6g02407 364 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Viun6g02407 364 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169
Viun6g02407 364 Gene3D - 47 347 IPR036457 -
Viun6g02407 364 PANTHER PROTEIN PHOSPHATASE 73 344 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02407 Viun-Chr6 29280604 29284011 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02407 1 350 PP2C-type Phosphatase Gene Family AT3G06270 72.857 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02407 - - gsj:114373061 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02407 6 29280604 29284011 Viun6g02407 6 29280604 29284011 ECH
Viun3g05838 3 63366803 63370300 Viun6g02407 6 29280604 29284011 PCT