Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02398 ATGATTGTAAAGGAGCATTTTGTTGGTACTGAACTTGCAATGAATAATGCTATTGTGGAGGAGGAAATAGACTTTTCTTGTGATCCGTACATAGGGTTGGAATTTGACACAGCAGATGAAGCACTAAAGTTTTACACTTCATATGCAAATCGAACAGGATTTAAAGTTCGGATTGGTCAGCTGTATAGATCAAGAACTGATGGGTCAGTTTCTTCTCGAAGATTTGTGTGCTCAAAGGAGGGACATCAACTCAGTTCAAGAACAGGCTGTCCAGCATTCATAAGGGTGCAAATAAATGGTTCTGGAAAGTGGGTGATTGATCATTTTCATAAGGACCATAATCACAATTTTGAAATCAGTGGTGAAGAAAACTGTACTCCAACATTGCAACAGAAAGGTGGTACAGTTGTCAACTCTCTTACTGAGTTTACTCGGAGGCCAAGGAAGAAATTGCTCGAAGAAGCCAATAATGATTCCTCTTGTCCCTTTGGCATTATTGATTTCAAGCGTCTGAGAAAGGAAGAACTTGATGGACAGCCCAAGACTGAACCATATGTGGGTCAAGAGTTCAGTTCACCTAATGAAGCCTACCAATTTTATCACGCATATGCAGCGCATTTGGGGTTTGGAGTTCGAATTGGTCAGTTGTTTCGTTCTAAGAATGATGGATTGATTACATCCCGCAGATTTGTTTGCTCCAAGGAGGGGTTCCAGCATCCTTCAAGAGTTGGCTGTGGGGCTTATTTAAGGATTAAGAGACAGCCGTCAGGAAAGTGGACAGTGGACCGCCTCCGAAAAGATCATAACCATGATTTGGACTCTGAAAAAGAGGGCAGGGAAAAAGGTCTTCATGCTTCTAATATTCTGAATGACGATGCAGATACTGGATTTGTAAACGGTGACTTGTTTAGAATCGATAACTACCCTGTCCCTAGAGGTGGTAGGCAAAATCACATTAGAAGTGAGTGGTACAACATTCTTTTAGAGTATTTTCAAACGAGACAAACAGAAGATACTGGATTCTTTTATGCTGTGGAAGTTGATAATGGTAATTGTATGAGCATGTTTTGGGCGGATGGCAGATCTAGATATTCATGTAGTCAGTTTGGTGACGTCCTAGTCTTAGACACATCATACCGAAAAACTGTCTATTTGGTACCTTTTGCTACTTTTGTTGGGGTCAACCATCACAAGCAACCTGTGCTTCTTGGATGTGCTTTAGTTGCTGATGAATCTGAAGAATCTTTCACTTGGTTGTTTCAGACATGGCTTAGGGCAATGTCTGGCCGGCAGCCTCTGACAGTTATTGCCGATCAAGACATTGCAGTCCAGAGGGCAATAGCAAAAGTCTTTCCTGTAACCTATCATCGCTTTTCGTTGTGGCAAATCAAGGCAAAGGAACAAGAGAACATGGGTCTGATGGGTGATGGCTTCACAAAAGACTATGAAAAGTGTGTTTACCAGAGTCAGACAGTTGATGAATTTGACGCCACATGGAACGTGCTACTCAACAAATATGGATTGAAGGACAATGCTTGGCTAAAAGAGATGTACGAGAAGCGGGCATCTTGGGTTCCATTGTATTTAAAGGGCACATTTTTTGCTGGCATTCCCATGAATGAAAGCCTTGATTCATTCTTTGGTGCACTTTTAAATGCCCAGACACCTCTCTTGGAGTTCATTCCTCGGTACGAAAGGGGTCTTGAGCGACGCCGCGAGGAAGAAAGAAAAGAGGATTTTAATACTTCTAATTTTCAACCCATTTTGCAAACAAAAGAACCAGTTGAAGAACAGTGCAGAAGGCTTTACACTCTTGCTGTATTCAAAGTATTTCAAAAAGAGCTATTGCAGTGCTTTAGCTATCTTGGGTTTAAAATATTTGAAGAAGGGGGTCTCAGCAGATATATGGTGCGAAGGTGTGGAAATGATATGGAGAAACATGTAGTTACGTTTAATGCATCAAATCTCAGCATAAGTTGTAGCTGTCAGATGTTTGAGCATGATGGTGTTCTTTGTAGACACGTGCTGAGGGTTTTCCAGATATTACAATTAAGAGAAGTTCCTTCTCGCTACATCTTACACCGGTGGACAAGAAATGCTGAGGATGGTGTCTTTCCTGACATAGAATCGTGGAGCAGCTCTCAGGAACTTAAAAATTTGATGCTATGGAGTCTAAGAGAAACTGCATCTAAATACATAGATGCTGGTGCAACATCCATTGAAAAGTATAAACTTGCCTATGAAATTTTGCGAGAGGGTGGGAGAAAGCTTTGTTGGCACAGGTGA 2286 0.4138 MIVKEHFVGTELAMNNAIVEEEIDFSCDPYIGLEFDTADEALKFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLSSRTGCPAFIRVQINGSGKWVIDHFHKDHNHNFEISGEENCTPTLQQKGGTVVNSLTEFTRRPRKKLLEEANNDSSCPFGIIDFKRLRKEELDGQPKTEPYVGQEFSSPNEAYQFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHPSRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLDSEKEGREKGLHASNILNDDADTGFVNGDLFRIDNYPVPRGGRQNHIRSEWYNILLEYFQTRQTEDTGFFYAVEVDNGNCMSMFWADGRSRYSCSQFGDVLVLDTSYRKTVYLVPFATFVGVNHHKQPVLLGCALVADESEESFTWLFQTWLRAMSGRQPLTVIADQDIAVQRAIAKVFPVTYHRFSLWQIKAKEQENMGLMGDGFTKDYEKCVYQSQTVDEFDATWNVLLNKYGLKDNAWLKEMYEKRASWVPLYLKGTFFAGIPMNESLDSFFGALLNAQTPLLEFIPRYERGLERRREEERKEDFNTSNFQPILQTKEPVEEQCRRLYTLAVFKVFQKELLQCFSYLGFKIFEEGGLSRYMVRRCGNDMEKHVVTFNASNLSISCSCQMFEHDGVLCRHVLRVFQILQLREVPSRYILHRWTRNAEDGVFPDIESWSSSQELKNLMLWSLRETASKYIDAGATSIEKYKLAYEILREGGRKLCWHR 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02398 761 SMART 26again6 658 685 IPR006564 GO:0008270
Viun6g02398 761 Pfam FAR1 DNA-binding domain 43 117 IPR004330 -
Viun6g02398 761 Pfam FAR1 DNA-binding domain 198 272 IPR004330 -
Viun6g02398 761 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 16 124 IPR031052 GO:0006355
Viun6g02398 761 Pfam SWIM zinc finger 654 680 IPR007527 GO:0008270
Viun6g02398 761 Pfam MULE transposase domain 372 465 IPR018289 -
Viun6g02398 761 ProSiteProfiles Zinc finger SWIM-type profile. 647 683 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02398 Viun-Chr6 29236627 29239874 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Viun6g02398 MULE 3.9e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02398 - - gmx:100816656 1445.64