Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02372 ATGATTGGAGGCAATGGCATACAAATGGCCAAGTTGCAAAACTACTTATTCGGGATAGCAGGTGGGAAACTTATAGAGCGAATTCGTTCAATGGCATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGCGAGAAGTCTCGTCGGTGACAACTTATCCCTCATTGTGCAAAACATAGCAAGAATCACAACTGGTTTAGCTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTTATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAGAACGATTCAGTGCAGATGCAAAGGTGAATTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACAATAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGTTTGGGGCTTTATAGTGGTGTAGGACTAGGCTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTATGTAGGATCGCTTCTTGTGCAAGACGGTAAAGCAACCTTTGAAGAAGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATAATCAAAATTCTTGAGACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCAAAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTCAGCTTTTGTTACCCAACAAGGCCTGACATTCAAATCTTCAAGGATTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCATAGAGAGATTTTACAACCCTGATTCTGGACGTGTACTACTTGATGGAGTGGATATAAAAAACTTGAGACTGAGTTGGTTGAGGCAACAAATGGGTTTGCTTGGTGAAGAGCCTATTCTTTTCAATGAAAGTATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCGACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATATGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGGACGAGGGACACAACTGTCAAGAGGACAAAAACAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAAAATCCTTTTGCTGGATGGGGCAACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTCAGTGTTAATAGAACTACCGTTGTGGTAGCTCACCGTCTTCCAACAATTAAAGGTGCTGACATTATAGCAGTCGTCAAAAATGGGGTCATTGCTGAGAAGGGGAACCATGAAGCGTTGATGAAGATCGATGGAGTTTATGCTTCATTGGTATCTCTCCATATTAGTCAATCATAG 1554 0.4292 MIGGNGIQMAKLQNYLFGIAGGKLIERIRSMAFNKVVHQEISWFDHPSNSCGAVSARLATDASTARSLVGDNLSLIVQNIARITTGLAIAFTANWILAFVILAVSPLLLLQGYLQTKFVERFSADAKVNYEEASQVANDAIGSIRTVASFCAEPKVVDMYNKKCSGPEKQGVRLGLYSGVGLGFSFLALYCTNAFCFYVGSLLVQDGKATFEEVFKVFFALTVTAVGVSQSSALAPDTNKAKDSATSIIKILETKSAIDSSSDEGKTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLIERFYNPDSGRVLLDGVDIKNLRLSWLRQQMGLLGEEPILFNESIRANIAYSKEGGATEEEIVAAAEAANAHKFICSLPHSYDTPVGGRGTQLSRGQKQRIAIARAILKDPKILLLDGATSALDAESECVVQEALDKVSVNRTTVVVAHRLPTIKGADIIAVVKNGVIAEKGNHEALMKIDGVYASLVSLHISQS 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02372 517 CDD ABC_MTABC3_MDL1_MDL2 275 510 - -
Viun6g02372 517 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 10 509 IPR039421 -
Viun6g02372 517 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 12 240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02372 517 CDD ABC_6TM_Pgp_ABCB1_D2_like 12 258 - -
Viun6g02372 517 FunFam ABC transporter B family member 1 265 514 - -
Viun6g02372 517 FunFam ABC transporter B family member 1 1 241 - -
Viun6g02372 517 SMART AAA_5 302 495 IPR003593 GO:0016887
Viun6g02372 517 Pfam ABC transporter transmembrane region 2 225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02372 517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 512 IPR027417 -
Viun6g02372 517 SUPERFAMILY ABC transporter transmembrane region 12 255 IPR036640 GO:0005524|GO:0016020
Viun6g02372 517 Gene3D ABC transporter type 1, transmembrane domain 9 241 IPR036640 GO:0005524|GO:0016020
Viun6g02372 517 Gene3D ABC transporter type 1, transmembrane domain 242 264 IPR036640 GO:0005524|GO:0016020
Viun6g02372 517 Pfam ABC transporter 294 443 IPR003439 GO:0005524
Viun6g02372 517 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 275 512 IPR003439 GO:0005524
Viun6g02372 517 Gene3D - 265 513 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02372 Viun-Chr6 28988626 28993045 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02372 12 513 Calmodulin-binding Proteins AT2G36910 44.554 1.04e-135 422