Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02370 ATGTCGAGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGCGAGAAGTCTCGTCGGTGACAACTTATCCCTCATTGTGCAAAACATAGCAAGAATCACAACTGGTTTAGCTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTTATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAGAACGATTCAGTGCAGATGCAAAGGTGAATTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACAATAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGTTTGGGGCTTTATAGTGGTGTAGGACTAGGCTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTATGTAGGATCGCTTCTTGTGCAAGACGGTAAAGCAACCTTTGAAGAAGTTTTCAAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATAATCAAAATTCTTGAGACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCAAAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTCAGCTTTTGTTACCCAACAAGGCCTGACATTCAAATCTTCAAGGATTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCATAGAGAGATTTTACAACCCTGATTCTGGACGTGTACTACTTGATGGAGTGGATATAAAAAACTTGAGACTGAGTTGGTTGAGGCAACAAATGGGTTTGCTTGGTGAAGAGCCTATTCTTTTCAATGAAAGTATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCGACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATATGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGGACGAGGGACACAACTGTCAAGAGGACAAAAACAGCGCATAGCCATTGCAAGAGCCATTCTGAAAGACCCCAAAATCCTTTTGCTGGATGGGGCAACCAGTGCACTTGATGCAGAATCTGAGTGTGTGGTTCAAGAGGCTCTTGATAAAGTCAGTGTTAATAGAACTACCGTTGTGGTAGCTCACCGTCTTCCAACAATTAAAGGTGCTGACATTATAGCAGTCGTCAAAAATGGGGTCATTGCTGAGAAGGGGAACCATGAAGCGTTGATGAAGATCGATGGAGTTTATGCTTCATTGGTATCTCTCCATATTAGTCAATCATAG 1410 0.4326 MSSGAVSARLATDASTARSLVGDNLSLIVQNIARITTGLAIAFTANWILAFVILAVSPLLLLQGYLQTKFVERFSADAKVNYEEASQVANDAIGSIRTVASFCAEPKVVDMYNKKCSGPEKQGVRLGLYSGVGLGFSFLALYCTNAFCFYVGSLLVQDGKATFEEVFKVFFALTVTAVGVSQSSALAPDTNKAKDSATSIIKILETKSAIDSSSDEGKTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLIERFYNPDSGRVLLDGVDIKNLRLSWLRQQMGLLGEEPILFNESIRANIAYSKEGGATEEEIVAAAEAANAHKFICSLPHSYDTPVGGRGTQLSRGQKQRIAIARAILKDPKILLLDGATSALDAESECVVQEALDKVSVNRTTVVVAHRLPTIKGADIIAVVKNGVIAEKGNHEALMKIDGVYASLVSLHISQS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02370 469 SUPERFAMILY ABC transporter transmembrane region 2 207 IPR036640 GO:0005524|GO:0016020
Viun6g02370 469 CDD ABC_MTABC3_MDL1_MDL2 227 462 - -
Viun6g02370 469 PANTHER ABC TRANSPORTER B FAMILY 2 464 IPR039421 -
Viun6g02370 469 CDD ABC_6TM_Pgp_ABCB1_D2_like 2 210 - -
Viun6g02370 469 SMART AAA_5 254 447 IPR003593 GO:0016887
Viun6g02370 469 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 464 IPR027417 -
Viun6g02370 469 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 192 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02370 469 Pfam ABC transporter transmembrane region 2 177 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02370 469 Gene3D ABC transporter type 1, transmembrane domain 3 216 IPR036640 GO:0005524|GO:0016020
Viun6g02370 469 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 227 464 IPR003439 GO:0005524
Viun6g02370 469 Pfam ABC transporter 246 395 IPR003439 GO:0005524
Viun6g02370 469 FunFam ABC transporter B family member 1 217 466 - -
Viun6g02370 469 Gene3D - 217 465 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02370 Viun-Chr6 28988626 28993045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02370 3 465 Calmodulin-binding Proteins AT2G36910 45.708 3.64e-126 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02370 K05658 - vun:114186571 877.856