Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02365 ATGGCACACAACACCGACATGCCACCTTCTTCTACGTCACCTCAACACCATGAAAGAGACAATGCCAACCAGAAGGTTCCCTTCTACAAGCTATTCACTTTTGCAGATCATCTTGACGTGGCCTTCATGGCCATTGGCACAATCTCTGCCATGGCTAATGGCTGGTCGCAGCCTATCATGTCTGTCATTGTAGGAAAGCTTATCAACACCTTTGGCTCCACCGATCCATCAAATACCATCAAAGAGGTTTCTAAGGTTTCGTTATTATTTGTATACTTGGCTATTGCGAGTGGAGTTGCCTCGTTTCTCCAGGTAACATGTTGGATGGTGACAGGAGAAAGACAAGCCGCGAGGATTCGAGGTTTGTACTTGAAAACTATATTGAAGCAGGACATTGCTTTCTTTGACACTGAGACAACAACTGGTGAGGTTATTGGGAGAATGTCTGGTGACACTATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATACAACTTGCTTCAACTTTTATTGGTGGCTTTGTGATTGCCTTTGTAAGAGGATGGCGACTTACTGTTGTTTTGGTCGCATGTATACCATGTATTGTTGTTACTCGTGGAATTCTGTCCGTGTTGATGAGCAGAATGTCAAGTCGTGGCCAAGCTGCTTACGCAGAGGCAGGAACTGTGGTTGAACAAACAGTGGGAGCTATTAGAACAGTGGCATCTTTCACTGGTGAGAGAAAAGCAATAGAAAAGTATAATATCAAGTTAAAAATTGCTTATAAAACTATGGTTCAACAAGGGATGACCTCTGGTTTAGGAATGGGGTTACTTTTGTTGATTGTCTTCTGCACCTATGCACTTGCAATGTGGTATGGTTCTAAACTGGTTATTGAGAAAGAATTCCAGGGTGGAACCGTCATCACTGTAATAATAGCTCTTATGACTGGCGGAACGTCACTTGGTCAAACATCTCCTTGCCTAAACGCATTTGCCGCAGGACAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCAGAAATTGATGCTTATGACACCAATGGTGTTGTCATGGAAGACATAAGGGGGGATATTGAACTAAAAGATGTTTACTTTAGCTACCCTGCAAGGAAAAATGTGCAGATCTTCTCTGGATTCTCATTATATGTTCCCAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGAAGTGGAAAGTCTACTGTGATAAGCTTATTGGAAAGATTCTATGATCCTGATGCTGGAGAGGTACTGATAGATGGCGTCAATTTGAAGAATTTTCAGGTTAGATGGATAAGAGAACATATTGGGTTGGTTAGTCAAGAACCTATTCTGTTTGCAGCAAGTATCAAAGAGAACATTATGTATGGAAAAGAAGGTGCAACTGATGAGGAAATTAAGTCAGCAATAACACTTGCCAATGCCAATACGTTCATTGACAAGCTGCCTCAGGGCCTTGAGACAATGGCAGGCCAGAATGGGACTCAACTTTCTGGTGGGCAAAAGCAGAGAATTGCAATTGCAAGGGCAATTTTAAAGAACCCAAGAATCCTTCTTCTTGATGAAGCAACTAGTGCATTAGATGCCGAGTCCGAACGTGTTGTTCAAGAAGCATTAGAACAAGCCATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGCTTGACAACAATCAGAAATGCTGACACCATAGCGGTGGTTCATCAAGGAAAAATTGTGGAGCAAGGAACTCATGATGAGTTAATCAAGGATGTTGACGGTGCTTATTCTCAGCTTATTCGCCTACAGGAAGGAGCTACGGAAGCTGAGGGTAGCCATAATTCTGAAGCAGAGAAGTCAAGTAACAATGTTATTTTTGATAGCCACATAGCTAGATCTTCCACTCAGAGACAAGTTTCATTAAGAAGAGATTCATCTAGTAGACACTCACATAGCTTTACTCTTTCTCATCGAAGTGGGGTACATGAATCTGTAGAAATAGAAGATGGGGATGTTGAAAAAAGTAAAGGTGATGCTAAGAAGGTTTCTTTGAGACGTTTGGCCTACTTAAACAAGCCTGAAGTTCCTGTGTTAGTGCTTGGATCCGTTGCTGCAATAATAAATGGTCTTGTCTTCCCTATGTTTGGCTTCTTGTTTTCCTCAGCAATATCTATGTTCTTTGAACCTCCAGAAAAACAGCGGAAAGATTCTAGGTTCTGGGCACTTCTATATGTGGGTTTGGGTTTAATTACTCTTGTGGTCATACCTGTGCAAAATTACTTCTTCGGCGTTGCCGGAGGAAAATTAGTAGAAAGAATTCGTTCACTGACATTTGAAAAGGTTGTCCATCAAGAAATCAGTTGGTTTGATGATCCTGCAAATTCAAGTGGTGCAGTTGGGGCAAGGTTATCTAGTGATGCTTCAACAGTGAAAAGTCTAGTTGGTGATACACTGGCCCTCATTGTGCAAAACTTATCAACAATCATAGCTGGTCTAGTTATATCATTCACTGCTAATTGGATTCTTGCTTTCATTATTCTGGCTGTGTCACCCTTGGTCCTTATGCAAGGATTTCTTCAGATGAAGTTTCTTAAAGGATTCAGTGCGGATGCCAAGGTAAAGTACGAAGAGGCAAGTCAGGTGGCAAATGATGCTGTTGGTAGCATCAGAACTATCGCATCATTTTGTGCCGAATCGAAGGTGATGGATATGTACCGTAAGAAATGTTTAGAGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTGAGTGGTGCAGGATTTGGTTTCTCTTTTTTGGCTCTGTACTGCACAAATGCTTTCTGTTTCTACATAGGATCTGTTCTTGTGGAACATGGGAAAGCAACTTTTCCAGAGGTTTTCAAGGTCTTCTTTTGTTTAACAATAACAGCAATCGGCATTTCCCAGTCTAGTGCCTTGGCACAAGACACCAACAAAGCCAAAGATTCCGCAGCTTCAATATTTAACATTCTTGACAGTACACCCACCATTGACTCCAGCAGCAATGAGGGTAGAACACTAGAAGCCATTTCTGGTGATATTGATTTTCAACATGTCAGTTTTAGTTACCCAACTAGGCCTCATATTCAAATTTTCAAAGATTTGTGTCTAAACATTCCAGCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGCAGTGGAAAATCAACAGTGATCAGCCTCTTAGAGAGATTTTACAACCCTCACACTGGACGTATACTACTGAATGGAGTGGATATAAAAGAGTTCAGACTAAGCTGGTTGAGACAGCAAATGGGTTTGGTTGGTCAAGAACCTATTCTCTTCAATGAAAGCATTCGTGCCAACATAGCTTATGGAAAAGAAGGAGTTGCCACAGAGGAAGAGATAACTGCAGCAGCCAAAGCATCCAATGCAAACCAATTCATATGTGCTCTTCCCGAAGGCTATGACACCCTTGTTGGAGAAAGAGGCACACGATTTTCAGGAGGACAAAAGCAGCGCATAGCCATTGCAAGAGCCATGCTGAAAGATCCCAAAATCCTCTTGCTTGATGAGGCAACTAGTGCACTTGATGCCGAATCAGAGAAAGTAGTTCAAGAGGCTCTAGATAGAGTGAGTGTGAATAGAACTACAGTAGTAGTAGCTCACCGTCTCACAACAATTCGAGGGGCTGATATAATAGCTGTAGTGAAAGATGGAGCGGTAGCTGAGAAGGGAACACATAATGAGTTGATGAAGATTATTGATGGAGTCTATGCATCATTGGTCGCTCTACATACGACTGCATCTTAA 3792 0.4198 MAHNTDMPPSSTSPQHHERDNANQKVPFYKLFTFADHLDVAFMAIGTISAMANGWSQPIMSVIVGKLINTFGSTDPSNTIKEVSKVSLLFVYLAIASGVASFLQVTCWMVTGERQAARIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFIGGFVIAFVRGWRLTVVLVACIPCIVVTRGILSVLMSRMSSRGQAAYAEAGTVVEQTVGAIRTVASFTGERKAIEKYNIKLKIAYKTMVQQGMTSGLGMGLLLLIVFCTYALAMWYGSKLVIEKEFQGGTVITVIIALMTGGTSLGQTSPCLNAFAAGQAAAYKMFETIKRKPEIDAYDTNGVVMEDIRGDIELKDVYFSYPARKNVQIFSGFSLYVPSGTTAALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNFQVRWIREHIGLVSQEPILFAASIKENIMYGKEGATDEEIKSAITLANANTFIDKLPQGLETMAGQNGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALEQAMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEQGTHDELIKDVDGAYSQLIRLQEGATEAEGSHNSEAEKSSNNVIFDSHIARSSTQRQVSLRRDSSSRHSHSFTLSHRSGVHESVEIEDGDVEKSKGDAKKVSLRRLAYLNKPEVPVLVLGSVAAIINGLVFPMFGFLFSSAISMFFEPPEKQRKDSRFWALLYVGLGLITLVVIPVQNYFFGVAGGKLVERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSSDASTVKSLVGDTLALIVQNLSTIIAGLVISFTANWILAFIILAVSPLVLMQGFLQMKFLKGFSADAKVKYEEASQVANDAVGSIRTIASFCAESKVMDMYRKKCLEPEKQGVRLGLVSGAGFGFSFLALYCTNAFCFYIGSVLVEHGKATFPEVFKVFFCLTITAIGISQSSALAQDTNKAKDSAASIFNILDSTPTIDSSSNEGRTLEAISGDIDFQHVSFSYPTRPHIQIFKDLCLNIPAGKTVALVGESGSGKSTVISLLERFYNPHTGRILLNGVDIKEFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGVATEEEITAAAKASNANQFICALPEGYDTLVGERGTRFSGGQKQRIAIARAMLKDPKILLLDEATSALDAESEKVVQEALDRVSVNRTTVVVAHRLTTIRGADIIAVVKDGAVAEKGTHNELMKIIDGVYASLVALHTTAS 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02365 1263 Pfam ABC transporter 1039 1188 IPR003439 GO:0005524
Viun6g02365 1263 Pfam ABC transporter 385 532 IPR003439 GO:0005524
Viun6g02365 1263 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g02365 1263 Pfam ABC transporter transmembrane region 699 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02365 1263 Pfam ABC transporter transmembrane region 43 314 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02365 1263 SMART AAA_5 392 578 IPR003593 GO:0016887
Viun6g02365 1263 SMART AAA_5 1047 1234 IPR003593 GO:0016887
Viun6g02365 1263 FunFam ABC transporter B family member 9 30 361 - -
Viun6g02365 1263 Gene3D ABC transporter type 1, transmembrane domain 90 994 IPR036640 GO:0005524|GO:0016020
Viun6g02365 1263 SUPERFAMILY ABC transporter transmembrane region 31 349 IPR036640 GO:0005524|GO:0016020
Viun6g02365 1263 FunFam ABC transporter B family member 1 678 986 - -
Viun6g02365 1263 FunFam ABC transporter B family member 1 355 604 - -
Viun6g02365 1263 Gene3D - 1010 1262 IPR027417 -
Viun6g02365 1263 SUPERFAMILY ABC transporter transmembrane region 680 1004 IPR036640 GO:0005524|GO:0016020
Viun6g02365 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Viun6g02365 1263 CDD ABC_MTABC3_MDL1_MDL2 1020 1256 - -
Viun6g02365 1263 PANTHER ABC TRANSPORTER B FAMILY 9 611 IPR039421 -
Viun6g02365 1263 CDD ABC_6TM_Pgp_ABCB1_D2_like 688 1003 - -
Viun6g02365 1263 CDD ABC_6TM_Pgp_ABCB1_D1_like 43 326 - -
Viun6g02365 1263 CDD ABC_MTABC3_MDL1_MDL2 365 603 - -
Viun6g02365 1263 ProSitePatterns ABC transporters family signature. 504 518 IPR017871 GO:0005524|GO:0016887
Viun6g02365 1263 MobiDBLite consensus disorder prediction 1 17 - -
Viun6g02365 1263 MobiDBLite consensus disorder prediction 637 659 - -
Viun6g02365 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 44 330 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02365 1263 ProSitePatterns ABC transporters family signature. 1160 1174 IPR017871 GO:0005524|GO:0016887
Viun6g02365 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 365 601 IPR003439 GO:0005524
Viun6g02365 1263 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 699 985 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02365 1263 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1020 1257 IPR003439 GO:0005524
Viun6g02365 1263 Gene3D - 363 616 IPR027417 -
Viun6g02365 1263 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1010 1257 IPR027417 -
Viun6g02365 1263 FunFam ABC transporter B family member 1 1010 1260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02365 Viun-Chr6 28961514 28967199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02365 8 1259 Calmodulin-binding Proteins AT2G36910 43.864 0.0 1043
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02365 K05658 - gmx:100801771 2080.45