Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02364 ATGATTGGAGGCAATGACATACAAATGGCCAAGTTGCAAAACTACTTATTCGGGATAGCAGGTGGGAAACTTATAGAGCGAATTCGTTCAATGGCATTTAATAAGGTTGTGCACCAAGAAATCAGTTGGTTCGATCATCCTTCAAATTCATGTGGTGCAGTTAGTGCAAGGCTAGCTACTGATGCTTCAACAGCGAGAAGTCTCGTCGGTGACAACTTATCCCTCATTGTGCAAAACATAGCAAGAATCACAACTGGTTTAGCTATAGCATTCACTGCTAATTGGATTCTGGCTTTTGTTATTCTGGCTGTGTCACCCTTGTTGCTTCTACAAGGATACCTTCAGACCAAGTTCGTAGAACGATTCAGTGCAGATGCAAAGGTGAATTATGAAGAGGCAAGTCAGGTGGCAAATGATGCTATTGGTAGCATTAGAACTGTTGCATCATTCTGTGCTGAGCCAAAGGTGGTGGATATGTACAAGAAGAAATGTTCAGGGCCAGAAAAACAAGGTGTTCGTTTGGGGCTTTATAGTGGTGTAGGACTAGGCTTCTCTTTTCTTGCTCTATACTGCACAAATGCTTTCTGTTTCTACGTAGGATCGCTTCTTGTGCAAGACGGTAAAGCAACCTTTGAAGAAGTTTTCCAGGTTTTCTTTGCCTTAACAGTTACAGCAGTTGGTGTTTCCCAGAGTAGTGCCTTGGCTCCAGATACTAACAAAGCCAAAGATTCTGCAACTTCAATAATCAAAATTCTTGAGACCAAATCAGCGATTGACTCCAGCAGTGATGAGGGCAAAACACTAGACCTCATAAAAGGTGATATTGAACTACAACAAGTCAGCTTTTGTTACCCAACAAGGCCTGACATTCAAATCTTCAAGGATTTGTGTCTAAGCATGCCAGCTGCAAAGACCGTTGCCTTGGTTGGGGAAAGTGGGAGTGGAAAATCAACAGTGATCAGCCTCATAGAGAGATTTTACAACCCTGATTCTGGACGTGTACTACTTGATGGAGTGGATATAAAAAACTTGAGACTGAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTGAAGAGCCTATTCTTTTCAATGAAAGTATTCGTGCCAACATAGCTTATAGTAAAGAGGGAGGTGCGACAGAGGAAGAGATAGTTGCAGCAGCAGAAGCAGCAAATGCACACAAGTTCATATGCTCTCTTCCACATAGTTATGACACCCCTGTGGGAGGACGAGGGACACAACTGTAA 1248 0.4279 MIGGNDIQMAKLQNYLFGIAGGKLIERIRSMAFNKVVHQEISWFDHPSNSCGAVSARLATDASTARSLVGDNLSLIVQNIARITTGLAIAFTANWILAFVILAVSPLLLLQGYLQTKFVERFSADAKVNYEEASQVANDAIGSIRTVASFCAEPKVVDMYKKKCSGPEKQGVRLGLYSGVGLGFSFLALYCTNAFCFYVGSLLVQDGKATFEEVFQVFFALTVTAVGVSQSSALAPDTNKAKDSATSIIKILETKSAIDSSSDEGKTLDLIKGDIELQQVSFCYPTRPDIQIFKDLCLSMPAAKTVALVGESGSGKSTVISLIERFYNPDSGRVLLDGVDIKNLRLSWLRQQMGLVGEEPILFNESIRANIAYSKEGGATEEEIVAAAEAANAHKFICSLPHSYDTPVGGRGTQL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02364 415 FunFam ABC transporter B family member 1 1 241 - -
Viun6g02364 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 266 415 IPR027417 -
Viun6g02364 415 Gene3D - 265 415 IPR027417 -
Viun6g02364 415 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 12 240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Viun6g02364 415 SUPERFAMILY ABC transporter transmembrane region 12 255 IPR036640 GO:0005524|GO:0016020
Viun6g02364 415 Gene3D ABC transporter type 1, transmembrane domain 243 264 IPR036640 GO:0005524|GO:0016020
Viun6g02364 415 Gene3D ABC transporter type 1, transmembrane domain 9 242 IPR036640 GO:0005524|GO:0016020
Viun6g02364 415 Pfam ABC transporter 294 387 IPR003439 GO:0005524
Viun6g02364 415 CDD ABC_6TM_Pgp_ABCB1_D2_like 12 258 - -
Viun6g02364 415 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 11 415 IPR039421 -
Viun6g02364 415 Pfam ABC transporter transmembrane region 2 225 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02364 Viun-Chr6 28958307 28960510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02364 12 415 Calmodulin-binding Proteins AT2G36910 41.481 3.60e-96 311