Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02352 ATGAAGATCTCAATATCAGCCTGTGCCTGCAAGCAAGAGCTGCCCCTAGTAAGTTTCCAAAAGGGGCTAACGATGGAGTCGTTGTTTCATCATCGGAATAAGGACAAGGTGGTAGTGATAATGGGGGCCACGGGTACCGGCAAGACGAAGTTGGCCGTCGACGTGGCAAAACACTTCCAACCAGCGGAGATAGTGAACTCCGACAAAATGCAAGTGTACAAGGGCCTCGACATCACCACGAACAAGGTCACCGAAGAAGAGTGTGGCGGGGTCCCACATCACTTGCTTGGCACTGTTGACCCTAATATAAATTTCACCGCCAGCGACTTCTGTCGCCACGCCACTTCCGCAATCGATTCCATTGTGGAAAGGAATGGCTTACCCATCATTGCTGGAGGCTCCAATTCTTACTTGGACACGCTCGTCAATCACCACGCCGAGTTTAGGTTAAGGTACCAGTGTTGTTTCCTCTGGGTTGACGTCTCTCTCCCCGTGCTCCATTCCTCTCTTCAGGCACGTGTGGACCGCATGATCGACGCCGGTCAAGTCAACGAGGTTCGCGACTTCTTCGATCCCCGCGCCGATTACACCAGAGGGATCCGAAGGGCCATTGGGGTGCCCGAATTCCACGATTTCCTACGCGCCGAAGCTTCTGGGACCGAGGACCACACAACCACAAAGAGACTTCTGGAGGCTGCCATTGCCAGGATCAAGATCAACAACTGCACGCTCGCCAACCGCCAGATTCAAAAGATTCACCGCCTCCACGGGTTGTGGAAACGGAACATGCACCGCCTCGACGCCACAGAGGTTTTCCTCGGCTCCCCCGACGCCTGGCACGACCACGTGCTCGCCAAGAGCTTGGTCGTCCTCCACAAGTTCCTTTTCGAGGAAAAGAAAACGCACGTCCCCGCCGGAATCGTGTCCCCGAAAGACGTAATTGCAGCTGTTTCTGCGCCGTCGGTAGCAATGGCAGCAACCCATTAG 987 0.5481 MKISISACACKQELPLVSFQKGLTMESLFHHRNKDKVVVIMGATGTGKTKLAVDVAKHFQPAEIVNSDKMQVYKGLDITTNKVTEEECGGVPHHLLGTVDPNINFTASDFCRHATSAIDSIVERNGLPIIAGGSNSYLDTLVNHHAEFRLRYQCCFLWVDVSLPVLHSSLQARVDRMIDAGQVNEVRDFFDPRADYTRGIRRAIGVPEFHDFLRAEASGTEDHTTTKRLLEAAIARIKINNCTLANRQIQKIHRLHGLWKRNMHRLDATEVFLGSPDAWHDHVLAKSLVVLHKFLFEEKKTHVPAGIVSPKDVIAAVSAPSVAMAATH 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02352 328 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 263 - -
Viun6g02352 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 294 IPR039657 -
Viun6g02352 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 263 - -
Viun6g02352 328 Pfam IPP transferase 71 145 - -
Viun6g02352 328 Pfam IPP transferase 149 250 - -
Viun6g02352 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 194 IPR027417 -
Viun6g02352 328 Gene3D - 34 295 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02352 Viun-Chr6 28859774 28861648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02352 151 301 C2H2 Transcription Factor Family AT2G27760 33.898 5.46e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02352 K10760 - gmx:100812928 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02352 6 28859774 28861648 Viun6g02352 6 28859774 28861648 ECH
Viun3g05878 3 63632674 63634489 Viun6g02352 6 28859774 28861648 PCT