Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02346 ATGGGTATCTCATGGAGTGGCAGAAGAAGAAACAATTTCATCCAAAACACACCGCCTCCACTCCCACCTCCCCCTTACTATTACCCTCCCCAATCCAACCACCCTCCTCCGCCGCCACCGCAGGGCTACTTTCTCCCTTCCACAACCTCTTACTCCCCGCACAACAACAACTATGCTGCTGCCCCTCCCTTGCCTCCACCGCCACAGCCGCCACCGCCGCCGCAGACCCATTCCATCTCCTTCTATTACCCCAACCAGAATGCCTATCCCAACTACGCCAATTCCGCGCCCAATCGCCTTCACTACCAACCTTTCTACCACCCTCAGCCTAGCATGTTGCCCGCCGCCACTCGCGCCTCTGCCTCCACTCCTCCGCCCTATGTCGATCACCAGGCCGCGAAGAAGATAAGAAACTATGTTAACGTCCACAAAGACACCCTGCGCCTCGAGGTTGACCAGGAAAACCCCGATCACCATCTCATTTCCTTCGTTTTCGATGCTGTCTACGATGGCAGCATTACTGTCTCCTACTTTGCCAAAGAAGAAGAAAAATGTAGGTTTGTTCCATTATTTCCTGATGCATTTCAGCCAGTCACAATACCCTTTCAGAAAGGAGTTGGCCAGACGTTTAATCAGCCTTCAGGAACAGGAATTGACCTAGGCTTCTTTGAATTGGATGATCTTTCAAAGCCCTCACCTGGAGAAGATGTCTTTCCTCTAGTAATATGTGCCGAAACAAGTTTGAAAACATCCTCGGAAGATGAAACACCGGGTGATTCTGTGCTAGATGCATCACCTCACATGCAAATAACTCAAGGTGTCTTGGAGAAAAGTAATGGTGCTGGTCCTTTCCAGATAAAAGTAGTTAGGCAGATTTTGTGGATTGATGGTGTTAGATATGAGTTGAGAGAGTTATATGGAATAGCAAGCTCATCTGCAGCTGATTTTGACGACAATGATCCCGGGAAGGAGTGTGTCGTATGCATGACTGAACCAAAGGATACAGCTGTCTTACCTTGTCGACATATGTGTTTGTGCGGTGACTGTGCAAAAGCTTTGCGACTTCAATACAATAAATGCCCTATATGCCGTCAGTCTATCGAGGAACTCATAGAGATCAAAGTAAACAATGACAATCAATGA 1143 0.4829 MGISWSGRRRNNFIQNTPPPLPPPPYYYPPQSNHPPPPPPQGYFLPSTTSYSPHNNNYAAAPPLPPPPQPPPPPQTHSISFYYPNQNAYPNYANSAPNRLHYQPFYHPQPSMLPAATRASASTPPPYVDHQAAKKIRNYVNVHKDTLRLEVDQENPDHHLISFVFDAVYDGSITVSYFAKEEEKCRFVPLFPDAFQPVTIPFQKGVGQTFNQPSGTGIDLGFFELDDLSKPSPGEDVFPLVICAETSLKTSSEDETPGDSVLDASPHMQITQGVLEKSNGAGPFQIKVVRQILWIDGVRYELRELYGIASSSAADFDDNDPGKECVVCMTEPKDTAVLPCRHMCLCGDCAKALRLQYNKCPICRQSIEELIEIKVNNDNQ 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02346 380 MobiDBLite consensus disorder prediction 16 44 - -
Viun6g02346 380 MobiDBLite consensus disorder prediction 1 81 - -
Viun6g02346 380 FunFam probable E3 ubiquitin-protein ligase LOG2 309 374 - -
Viun6g02346 380 MobiDBLite consensus disorder prediction 59 78 - -
Viun6g02346 380 ProSiteProfiles Zinc finger RING-type profile. 325 364 IPR001841 -
Viun6g02346 380 CDD mRING-HC-C3HC5_MGRN1-like 323 364 IPR045195 -
Viun6g02346 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 374 IPR013083 -
Viun6g02346 380 PANTHER MAHOGUNIN 59 376 IPR045194 GO:0061630
Viun6g02346 380 Pfam Zinc finger, C3HC4 type (RING finger) 323 369 - -
Viun6g02346 380 SUPERFAMILY RING/U-box 317 370 - -
Viun6g02346 380 SMART ring_2 325 363 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02346 Viun-Chr6 28786260 28789704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02346 127 380 C3H Transcription Factor Family AT3G06140 61.176 1.81e-107 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02346 - - vra:106775674 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02346 6 28786260 28789704 Viun6g02346 6 28786260 28789704 ECH