Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02344 ATGTCTCACATAGCTGTCGAGAGGAACCGAAGAAGACAGATGAATGAACATCTCAAAGTTTTAAGATCGTTGACCCCATGTTTCTATATCAAAAGGGGAGATCAAGCATCTATAATAGGGGGTGTCATAGAATTCATCAAGGAGTTACACCAAGTTCTTCAGGCTTTGGAGTCCCAGAAAAGAAGAAAGAGTTTAAGCCCTAGCCCTGGTCCGAGTCCACGAACACTTCAGCCAAATTTTCATCAACTTGATTGCTCCTCCATAATTGGGAGCAATAATTCTTTCAAGGAACTGGGAGCAAGCTGCAACTCTTCTGTTGCGGATGTTGAAGTGAAAATCTGTGGTTCAAATGTGATCTTGAAAGTCATCTCCCAAAGAATTCCTGGTCAAGTTGCAAGGATCATAACTGTTTTGGAAAGTCTTTCCTTTGAAGTTCTTCATCTCAACATCAGCAGCATGGAGGAGACCGTCCTTTACCAGTTTGTGGTCAAGATAGAACTGGGATGTCAACTAAGTCTGGAGGAACTGGCAATGGAAGTGCAACAAAGCTTCTGCTCAGAGGCTATAACTATGCTGTGA 579 0.4266 MSHIAVERNRRRQMNEHLKVLRSLTPCFYIKRGDQASIIGGVIEFIKELHQVLQALESQKRRKSLSPSPGPSPRTLQPNFHQLDCSSIIGSNNSFKELGASCNSSVADVEVKICGSNVILKVISQRIPGQVARIITVLESLSFEVLHLNISSMEETVLYQFVVKIELGCQLSLEELAMEVQQSFCSEAITML 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02344 192 SMART finulus 4 55 IPR011598 GO:0046983
Viun6g02344 192 FunFam Transcription factor MUTE 1 66 - -
Viun6g02344 192 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 49 IPR011598 GO:0046983
Viun6g02344 192 Gene3D - 1 64 IPR036638 GO:0046983
Viun6g02344 192 PANTHER TRANSCRIPTION FACTOR FAMA 1 184 IPR044283 GO:0003700|GO:0010052
Viun6g02344 192 Pfam Helix-loop-helix DNA-binding domain 2 49 IPR011598 GO:0046983
Viun6g02344 192 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 68 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02344 Viun-Chr6 28755606 28757559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02344 1 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G06120 64.975 2.67e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun6g02344 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02344 - - gmx:100810771 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02344 6 28755606 28757559 Viun6g02344 6 28755606 28757559 ECH