Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02335 ATGGAGAAAAACCAGCGTGGACAAGCAGGAAAAGGAATTGTTCCAGGTGCAGCACAAGAAGGTGAAGGCATGAACCAGTATCATGCATCCAACCCTCCAACTCAGACCGTTGGTGTGCCTGTGGCTTCAGCCTATGGTGGAGGGTATCGCAATGATGGGCAAGGTATACAGGAGAAGAAGCGAGAAGAGTTGCAGCAACGGGTAAAAACGTTCTGGGAAAGACAGATGAAGGAAATTTCGGAGAACCCTGATTTGAAGAGTCAATTGCCTCTGACGAGGATTAAGAAGATCATGAAGTTTGATGATGATGTGAAGATGGTATCAAGTGAGGCTACTATGCTGTTAGGGAAGGCCTGTGAACTGTTCATAATGGAGCTGACAATGAGGTCTTGGGCTCACGTGGAGGATGATAGGAGGAAGATAATTCAGCAGACTGATGTTGCATCTGCAATCTCAATTAATGAGATGTTTGATTTTCTTGTTGATGTTCTTCCTGGGGATGACACAGTCCCAGCCATGGCGGGACCTCATCAAGTGCTTCCAACGCCAAATCAGAATACTCCTTACCCTTATCTGTCATTTCCACCACCACCATATGCTGCTCCTGGGAATGCTTCTTCTTCATCCGCTGCAAATCCACCCAATTCCAACTTCAATCCCATCCCAGATCAACAACACCCTTCCAATACCGAGGATCATTGA 702 0.4658 MEKNQRGQAGKGIVPGAAQEGEGMNQYHASNPPTQTVGVPVASAYGGGYRNDGQGIQEKKREELQQRVKTFWERQMKEISENPDLKSQLPLTRIKKIMKFDDDVKMVSSEATMLLGKACELFIMELTMRSWAHVEDDRRKIIQQTDVASAISINEMFDFLVDVLPGDDTVPAMAGPHQVLPTPNQNTPYPYLSFPPPPYAAPGNASSSSAANPPNSNFNPIPDQQHPSNTEDH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02335 233 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 199 - -
Viun6g02335 233 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 88 151 IPR003958 -
Viun6g02335 233 SUPERFAMILY Histone-fold 58 160 IPR009072 GO:0046982
Viun6g02335 233 MobiDBLite consensus disorder prediction 188 202 - -
Viun6g02335 233 Gene3D Histone, subunit A 48 165 IPR009072 GO:0046982
Viun6g02335 233 MobiDBLite consensus disorder prediction 203 226 - -
Viun6g02335 233 MobiDBLite consensus disorder prediction 174 233 - -
Viun6g02335 233 MobiDBLite consensus disorder prediction 1 60 - -
Viun6g02335 233 FunFam Nuclear transcription factor Y subunit C 55 166 - -
Viun6g02335 233 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02335 Viun-Chr6 28673211 28674642 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02335 70 229 CCAAT-HAP5 Transcription Factor Family AT1G54830 41.916 2.03e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun6g02335 CBFD_NFYB_HMF 1.7e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02335 K08066 - vum:124832126 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02335 6 28673211 28674642 Viun6g02335 6 28673211 28674642 ECH