Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02333 ATGGATGAGAAGAAGCGTGATGAAGGAGCAAAAGAAGGACGCGGCAAGAGCAAAGTTGAATCTGACACCAAGACGGATCCTCCAGCCAGTCCTCTGGCTCTGACCATTGGTCCCTCAGCACCTTCCTCTAGCACACAGTCACAAAAAAAGGAACCATTGGAGAAGCAACTGAGCAACTTCTGGGCAAAACAGCGTCAGGAAGTTGAGGAGCCGAGTGAGTTGAGGAATCATCACAGTTTGCCATTGGCTAGGATCAAGAGGATAATGAAGGCTGATGAGGATGTGAGAATGGTATCAGCTGAGGCTCCTGTGCTGTTGGCCAAGGCCTGTGAGATGTTCATCATGGAGCTCACAATGAGGGCATGGTCTAATGTTGAGGAGAACAAAAGGAAAACATTAAGTAAGAATGACATTGCAGCTGCAATGACAAAGTCTGATATCTATGATTTTCTTATTGACATTGTCCCCAGGGAAGACACTAGGGGTTCTCAAGTGTTTCCAGGTGTACCAGGAGCAACACCCTTTCCTCAGACTCTGTCTCAGATTATGCCTAACTATCCTGTGCCACCTCATCAACATGCTGCTGCAGGCTCACAATCTGATGCTGCTGCTGCTCAAACAATGCTCATGGGAATGCCCCTTCTTGATCCAACTCATCCTCAGCAGCTGCAACCCCCTACTTTTCCATCTCCAATGATGCCACCCAACCCTGAAGAAGAGAACAGCCCTTCTCCTGATTCTGATGATGACTGA 753 0.4807 MDEKKRDEGAKEGRGKSKVESDTKTDPPASPLALTIGPSAPSSSTQSQKKEPLEKQLSNFWAKQRQEVEEPSELRNHHSLPLARIKRIMKADEDVRMVSAEAPVLLAKACEMFIMELTMRAWSNVEENKRKTLSKNDIAAAMTKSDIYDFLIDIVPREDTRGSQVFPGVPGATPFPQTLSQIMPNYPVPPHQHAAAGSQSDAAAAQTMLMGMPLLDPTHPQQLQPPTFPSPMMPPNPEEENSPSPDSDDD 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02333 250 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 79 142 IPR003958 -
Viun6g02333 250 MobiDBLite consensus disorder prediction 36 60 - -
Viun6g02333 250 MobiDBLite consensus disorder prediction 219 241 - -
Viun6g02333 250 SUPERFAMILY Histone-fold 37 151 IPR009072 GO:0046982
Viun6g02333 250 MobiDBLite consensus disorder prediction 213 250 - -
Viun6g02333 250 MobiDBLite consensus disorder prediction 1 23 - -
Viun6g02333 250 MobiDBLite consensus disorder prediction 1 60 - -
Viun6g02333 250 Gene3D Histone, subunit A 42 157 IPR009072 GO:0046982
Viun6g02333 250 FunFam Nuclear transcription factor Y subunit gamma 42 157 - -
Viun6g02333 250 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 48 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02333 Viun-Chr6 28661890 28664939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02333 60 227 CCAAT-HAP5 Transcription Factor Family AT3G48590 51.786 2.59e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Viun6g02333 CBFD_NFYB_HMF 9.2e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02333 K08066 - var:108342662 251.521