Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02325 ATGATCTCTTTAACGAAATGCTCAGCGTCATCGCTCACTTGTTCTGCTTTCTCAACCAGAAAACTTCCCCTAGCAAGGCCTCAACTTCTCACATTACCAACCGTTAACAACGTTGAACAAAGCATAAGTCCCTCTCAGTTGTGCTCCCAGAAACCGCTGTACCTTTCATCCACAGAGAACATGGCATTGGTGAAGAGAAAGAGGGTGACGGAGTGCCAGGCCTACGAGGCTGACAGGTCACGCCCCATAGAGATTAACATTGAACTTCCGGGTGAAGATGCTGCTCAGAGGGTGAAGATTGGGGTGTATTTTGCCACCTGGTGGGCTTTGAATGTGGTCTTCAACATCTACAACAAGAAGGTTTTGAATGCTTTTCCTTACCCCTGGCTCACCTCCACTCTCTCCCTCGCCGCTGGTTCCCTCATGATGTTAATCTCCTGGGCCACCAGAGTTGCTGAAGTCCCAAAAGTTAACTTCGATTTCTGGAAGGCCTTGTTTCCCGTTGCGGTGGCGCACACAATTGGGCATGTTGCTGCAACTGTGAGCATGTCCAAGGTTGCTGTCTCTTTCACTCACATCATCAAGAGTGGAGAGCCTGCTTTCAGTGTCCTGGTGTCAAGGTTCTTGCTTGGGGAAGCGTTCCCCATGCCGGTTTATCTGTCACTGATGCCAATCATTGGTGGTTGTGCACTAGCTGCCGTGACTGAACTCAATTTCAATATGATTGGCTTCATGGGGGCTATGATATCCAATTTGGCATTTGTGTTCAGGAATATATTCTCAAAGAAAGGAATGAAGGGAATGTCTGTTAGTGGAATGAACTACTATGCCTGTCTTTCCATAATGTCTCTGTTGATCCTCACACCTTTTGCCATTGCTGTGGAAGGCCCCAGGGTTTGGGCTGCAGGCTGGCAATCAGCTATGTCTCAGATTGGTCCAAATTTTGTGTGGTGGGTAGCTGCTCAGAGTGTCTTCTATCACTTGTACAACCAAGTCTCTTATATGTCTCTGGATCAGATTTCTCCATTGACATTCAGCATTGGAAACACAATGAAGAGGATTTCGGTCATTGTCTCTTCTATTCTTATCTTTCACACCCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACTTTCCTCTATTCACAGGCTAAACAGTGA 1176 0.4711 MISLTKCSASSLTCSAFSTRKLPLARPQLLTLPTVNNVEQSISPSQLCSQKPLYLSSTENMALVKRKRVTECQAYEADRSRPIEINIELPGEDAAQRVKIGVYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVAEVPKVNFDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPMPVYLSLMPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSIMSLLILTPFAIAVEGPRVWAAGWQSAMSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPVQPINALGAAIAILGTFLYSQAKQ 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02325 391 PANTHER SOLUTE CARRIER FAMILY 35 99 390 - -
Viun6g02325 391 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 99 390 IPR004696 GO:0016020|GO:0022857|GO:0055085
Viun6g02325 391 Pfam Triose-phosphate Transporter family 99 387 IPR004853 -
Viun6g02325 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 141 234 - -
Viun6g02325 391 SUPERFAMILY Multidrug resistance efflux transporter EmrE 290 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02325 Viun-Chr6 28614360 28616639 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02325 20 391 Antiporters AT1G61800 77.807 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02325 K15283 K05350 gmx:100804205 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02325 6 28614360 28616639 Viun8g02768 8 36235641 36238575 ECH
Viun6g02325 6 28614360 28616639 Viun6g02325 6 28614360 28616639 ECH