Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02317 ATGAGTTGCTTCCCATGCTGCAAATCAGACACCAAACCAACCCCTGCCGGGTCAACCTCCGGCAAAGTTTCCAAAGGAAGAAGAACATTCAAATCAGTGGCTGCGGCTATGTCTCTTAAAACAGGCAGCAGCAGACACAGACAAATAGACGCAGAGATAAGAAAATTTGGAAGTGTCAAAAATGATGTCAAGGTATTCACATATGCACAGCTTGTTGAAGCAACGAATAACTTCAGTTCTGAAAGCCTGATCGGTGAAGGTGGATTCGGGAATGTTTACAAAGGATACATAAAAAGTGTTGAACAAACTGTAGCTGTGAAGGTACTGAACAGGGACGGAGCACAAGGAACACGAGAATTTTTTGCAGAAATTTTGATGCTAAGTATGGTTCAACACCCAAACCTTGTGAAGCTCATTGGCTATTGTGCAGATGACAGTTATAGAATTTTGGTTTATGAGTTCATGGCCAATGGGAGCTTGGAAACTCACCTTCTAGACTTAGCTGAAGGAAAGGAGCCTTTAGAGTGGAAGACCAGGATGAAAATAGCAGAGGGAGCAGCTAAAGGACTTGAATATTTGCATAGCAGTAGAGATACACCTATCATATACCGTGATTTCAAATCATCTAATATACTGTTAGATGAAAACTTTAATGCAAAACTCTCTGATTTTGGCCTGGCTAAGATTGGTCCCAAAGAAGGCCAAGAGCAAATGACAAGCAGGGTGATGGGAACTTTTGGTTATTGTGCACCAGAATATGCTGCTACGGGAAAACTTAGCACAAAGTCGGATATCTATAGTTTTGGGGTTGTGTTTTTGGAAATAATCTCGGGTAGGAGAGTATTTGACACCTCAAGAGCAACAGAAGAACAAAACTTGATTGATTGGGCACAACCTTTGTTTAAGGACAGAACGAAGTTTACTCTAATGGCTGATCCTTTGCTTAAAGGTCAGTTCCCCGTGAAGGGTCTATTCCAAGCACTTGCAGTGGCAGCAATGTGTTTACAAGAGGAACCTGACACACGACCTTACATGGACGATGTTGTGACGGCTCTTGCACATCTAGCAGTGCACAAAGTTGGAGACCAAGACCTAGCCGGAGACTCTATAAAATGTGCAGGCCATGTTGAATCTTTTAGAGTTTCAAGCTCTTCCGAAAGGGCGTAG 1167 0.4267 MSCFPCCKSDTKPTPAGSTSGKVSKGRRTFKSVAAAMSLKTGSSRHRQIDAEIRKFGSVKNDVKVFTYAQLVEATNNFSSESLIGEGGFGNVYKGYIKSVEQTVAVKVLNRDGAQGTREFFAEILMLSMVQHPNLVKLIGYCADDSYRILVYEFMANGSLETHLLDLAEGKEPLEWKTRMKIAEGAAKGLEYLHSSRDTPIIYRDFKSSNILLDENFNAKLSDFGLAKIGPKEGQEQMTSRVMGTFGYCAPEYAATGKLSTKSDIYSFGVVFLEIISGRRVFDTSRATEEQNLIDWAQPLFKDRTKFTLMADPLLKGQFPVKGLFQALAVAAMCLQEEPDTRPYMDDVVTALAHLAVHKVGDQDLAGDSIKCAGHVESFRVSSSSERA 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02317 388 PANTHER OS07G0668900 PROTEIN 3 361 - -
Viun6g02317 388 Pfam Protein kinase domain 79 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02317 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Viun6g02317 388 Gene3D Phosphorylase Kinase; domain 1 21 154 - -
Viun6g02317 388 SUPERFAMILY Protein kinase-like (PK-like) 61 350 IPR011009 -
Viun6g02317 388 FunFam Serine/threonine-protein kinase PBS1 155 369 - -
Viun6g02317 388 Gene3D Transferase(Phosphotransferase) domain 1 155 370 - -
Viun6g02317 388 CDD STKc_IRAK 84 352 - -
Viun6g02317 388 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Viun6g02317 388 MobiDBLite consensus disorder prediction 1 24 - -
Viun6g02317 388 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 51 154 - -
Viun6g02317 388 ProSiteProfiles Protein kinase domain profile. 78 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02317 Viun-Chr6 28549843 28551788 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02317 1 361 Glycoside Hydrolase AT3G07070 53.005 4.98e-134 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Viun6g02317 Pkinase 4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02317 - - gmx:100305361 637.876