Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02311 ATGATGCAGCAGCCAGGACTCGGCATGGCCCCTCCCACCATGGGGCAGCAGCCACAGCAACAGTATCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTTATGATGCAGCCGCAGCCCCAGGCGCCTCCTCCCATGTGGGCCCCCTCCGCCCAGCCTTCGTCGCAGCAGCAGCCCGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAAAACTATCTTTACACCTGCTTTGCACCTACCGGCGAGGTTACCTCTGTCAAAGTGATTCGAAATAAGCAAACTAGTCAATCAGAAGGTTACGGGTTTATTGAATTTAATAGTCGTGCTGCAGCTGAGAGAATTCTTCAGACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCTCCTGACTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTACAACTCCGTAAAGGGTGCAAAAGTTGTTATTGATCGGCTAACTGGTCGGACTAAGGGGTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGCATCATATCAGAATTCTCAAGCTCAAGGCACACAGAACGAAAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGATGCTAATGTCAGCGATGACCATTTGAGACAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGTTTTGTCCAGTTCGCTGACAGGTAA 933 0.4909 MMQQPGLGMAPPTMGQQPQQQYQQPPPQQQPYVMMQPQPQAPPPMWAPSAQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02311 310 FunFam Polyadenylate-binding protein RBP45C 150 242 - -
Viun6g02311 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Viun6g02311 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 309 IPR000504 GO:0003723
Viun6g02311 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Viun6g02311 310 MobiDBLite consensus disorder prediction 13 29 - -
Viun6g02311 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 310 IPR000504 GO:0003723
Viun6g02311 310 SMART rrm1_1 266 310 IPR000504 GO:0003723
Viun6g02311 310 SMART rrm1_1 159 233 IPR000504 GO:0003723
Viun6g02311 310 SMART rrm1_1 66 141 IPR000504 GO:0003723
Viun6g02311 310 MobiDBLite consensus disorder prediction 1 61 - -
Viun6g02311 310 Gene3D - 149 245 IPR012677 -
Viun6g02311 310 Gene3D - 9 148 IPR012677 -
Viun6g02311 310 MobiDBLite consensus disorder prediction 30 49 - -
Viun6g02311 310 MobiDBLite consensus disorder prediction 229 265 - -
Viun6g02311 310 MobiDBLite consensus disorder prediction 232 265 - -
Viun6g02311 310 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 310 - -
Viun6g02311 310 CDD RRM2_SECp43_like 157 236 - -
Viun6g02311 310 CDD RRM1_SECp43_like 66 146 - -
Viun6g02311 310 SUPERFAMILY RNA-binding domain, RBD 28 145 IPR035979 GO:0003676
Viun6g02311 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Viun6g02311 310 FunFam Polyadenylate-binding protein RBP45 11 149 - -
Viun6g02311 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Viun6g02311 310 SUPERFAMILY RNA-binding domain, RBD 155 309 IPR035979 GO:0003676
Viun6g02311 310 Gene3D - 246 310 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02311 Viun-Chr6 28524136 28527472 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02311 64 308 Eukaryotic Initiation Factors Gene Family AT2G36660 25.296 1.20e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02311 - - gmx:100801562 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02311 6 28524136 28527472 Viun6g02311 6 28524136 28527472 ECH
Viun3g06151 3 64878924 64883099 Viun6g02311 6 28524136 28527472 PCT