Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02310 ATGATGCAGCAGCCAGGACTCGGCATGGCCCCTCCCACCATGGGGCAGCAGCCACAGCAACAGTATCAGCAGCCGCCGCCGCAGCAGCAACCCTACGTTATGATGCAGCCGCAGCCCCAGGCGCCTCCTCCCATGTGGGCCCCCTCCGCCCAGCCTTCGTCGCAGCAGCAGCCCGCCAGCGTTGACGAGGTCCGGACCCTGTGGATCGGTGATTTGCAGTACTGGATGGATGAAAACTATCTTTACACCTGCTTTGCACCTACCGGCGAGGTTACCTCTGTCAAAGTGATTCGAAATAAGCAAACTAGTCAATCAGAAGGTTACGGGTTTATTGAATTTAATAGTCGTGCTGCAGCTGAGAGAATTCTTCAGACATATAATGGGGCTATTATGCCAAATGGGGGGCAGAGTTTCAGGTTGAATTGGGCAAGTTTTAGTGCTGGTGAAAGGCGCCATGATGATTCTCCTGACTACACAATATTTGTTGGCGACTTGGCTGCAGATGTTACTGATTACTTGCTCCAAGAGACATTTAGGGCTCGTTACAACTCCGTAAAGGGTGCAAAAGTTGTTATTGATCGGCTAACTGGTCGGACTAAGGGGTATGGCTTTGTTAGGTTTGCGGATGAGAGTGAACAAGTGAGGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGACCCATGAGAATTGGGCCAGCCAGTAACAAAACCCCTGCTACTCAGCCGAAAGCATCATATCAGAATTCTCAAGCTCAAGGCACACAGAACGAAAATGATCCTAATAATACAACTATTTTTGTGGGCAATTTGGATGCTAATGTCAGCGATGACCATTTGAGACAAGTTTTTAGCCAGTATGGAGAATTAGTTCATGTGAAGATTCCAGCAGGCAAGCGATGTGGTTTTGTCCAGTTCGCTGACAGGAAATGTGCTGAAGAGGCACTTCGGATGCTAAATGGGACACTATTGGGTGGACAGAATGTTCGTCTGTCATGGGGACGCAGTCCTTCAAACAAACAGGCTCAGGCAGATCCAAACCAGTGGAATGGTGGTGGTGGTGGATACTATGGGTATGCACAAGGTTATGAAAACTATGGTTATGCTCCTGCTGGTCAAGATCCAAACGTGTATGGCAGTTATCCGGGGTATCCCGGTTACCAACCTCCTCAGCAACAGCAGCAAATAGGATACAGTTGA 1203 0.4904 MMQQPGLGMAPPTMGQQPQQQYQQPPPQQQPYVMMQPQPQAPPPMWAPSAQPSSQQQPASVDEVRTLWIGDLQYWMDENYLYTCFAPTGEVTSVKVIRNKQTSQSEGYGFIEFNSRAAAERILQTYNGAIMPNGGQSFRLNWASFSAGERRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKGYGFVRFADESEQVRAMTEMQGVLCSTRPMRIGPASNKTPATQPKASYQNSQAQGTQNENDPNNTTIFVGNLDANVSDDHLRQVFSQYGELVHVKIPAGKRCGFVQFADRKCAEEALRMLNGTLLGGQNVRLSWGRSPSNKQAQADPNQWNGGGGGYYGYAQGYENYGYAPAGQDPNVYGSYPGYPGYQPPQQQQQIGYS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02310 400 Gene3D - 246 373 IPR012677 -
Viun6g02310 400 Gene3D - 9 149 IPR012677 -
Viun6g02310 400 MobiDBLite consensus disorder prediction 13 29 - -
Viun6g02310 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 337 IPR000504 GO:0003723
Viun6g02310 400 FunFam Polyadenylate-binding protein RBP45C 150 241 - -
Viun6g02310 400 FunFam Polyadenylate-binding protein RBP45 11 149 - -
Viun6g02310 400 MobiDBLite consensus disorder prediction 1 61 - -
Viun6g02310 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Viun6g02310 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 330 IPR000504 GO:0003723
Viun6g02310 400 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Viun6g02310 400 SUPERFAMILY RNA-binding domain, RBD 148 251 IPR035979 GO:0003676
Viun6g02310 400 SMART rrm1_1 159 233 IPR000504 GO:0003723
Viun6g02310 400 SMART rrm1_1 66 141 IPR000504 GO:0003723
Viun6g02310 400 SMART rrm1_1 266 333 IPR000504 GO:0003723
Viun6g02310 400 MobiDBLite consensus disorder prediction 30 49 - -
Viun6g02310 400 FunFam Polyadenylate-binding protein RBP45C 242 371 - -
Viun6g02310 400 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 56 341 - -
Viun6g02310 400 CDD RRM2_SECp43_like 157 236 - -
Viun6g02310 400 CDD RRM1_SECp43_like 66 146 - -
Viun6g02310 400 Gene3D - 150 245 IPR012677 -
Viun6g02310 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Viun6g02310 400 MobiDBLite consensus disorder prediction 380 400 - -
Viun6g02310 400 MobiDBLite consensus disorder prediction 232 266 - -
Viun6g02310 400 SUPERFAMILY RNA-binding domain, RBD 254 365 IPR035979 GO:0003676
Viun6g02310 400 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Viun6g02310 400 MobiDBLite consensus disorder prediction 229 266 - -
Viun6g02310 400 SUPERFAMILY RNA-binding domain, RBD 28 145 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02310 Viun-Chr6 28523491 28527467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02310 64 344 Eukaryotic Initiation Factors Gene Family AT2G36660 23.529 6.61e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02310 - - gmx:100801562 608.216