Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02284 ATGAAGCCTGAACCTGCTCAGAAACGCTCCCCACCTTCAACCATGTCTTCTTCTTCCTCTTCTCTCATCACCACCCTTGCTGATCCTATCAATAACCCTTCACACCCTCCTCAGTTAAGACCTCCTCGCCGTCGTTTTCCCTCTCACCAACTTCCTGAGATAGGCCTCAAAACTCCTATGGTTAGGCCTTATGTCCGATCAAAAATGCCCAGGCTTCGTTGGACACCAGATCTCCATCGTTGCTTCGTGCATGCAGTTCAGAGACTTGGAGGAGAAGACAGGGCCACACCAAAGTTGGTCTTACAGCTGATGAATGTAAAGGGGCTTACCATATCTCATGTCAAAAGTCATCTTCAGATGTACAGGAGCATGAGGCACGAACAGATGAGTGAAGGTGCCAGGAAAAATGATGTGGCTCCGGAGTTTCTAGCTTCCACATTCTCAACTCTTGGCCCAAGATACACCCAACAGAATCCTCACCAAAGAAGCTGCACGGAAGCGCTTGTTCCCAACCATGCTCAATGGAATGATTGTGAGGAAGGGTGTTACAGTGGAAAGCATGGGGGTAAATCGATTAATGAAGAGAAGATGCAGTCCTACATCATCTTCGAGGGTATTCTGAGTGGCCAGACTGTGGATGAGAATAAAACTGGTCCTGAAAAGGTGTCACTAGGGGGTGCCACCGGATACAAAAGCGACCATGAAAGATTCCAAGACAGAACTACTACTGCCATAGGAGGAGGCACACTGTCCTTATCAATGACCTCCAGGGCTACTTCACATTCATTCTTCAATCGCAGCCACACTGGTCCAGATGCCAATGATGTCTCTCTTGAGCTCACGCTCTCTTAG 852 0.4836 MKPEPAQKRSPPSTMSSSSSSLITTLADPINNPSHPPQLRPPRRRFPSHQLPEIGLKTPMVRPYVRSKMPRLRWTPDLHRCFVHAVQRLGGEDRATPKLVLQLMNVKGLTISHVKSHLQMYRSMRHEQMSEGARKNDVAPEFLASTFSTLGPRYTQQNPHQRSCTEALVPNHAQWNDCEEGCYSGKHGGKSINEEKMQSYIIFEGILSGQTVDENKTGPEKVSLGGATGYKSDHERFQDRTTTAIGGGTLSLSMTSRATSHSFFNRSHTGPDANDVSLELTLS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02284 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 126 IPR017930 -
Viun6g02284 283 MobiDBLite consensus disorder prediction 262 283 - -
Viun6g02284 283 Gene3D - 69 127 - -
Viun6g02284 283 FunFam Myb family transcription factor 68 126 - -
Viun6g02284 283 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 41 164 IPR046955 GO:0003700
Viun6g02284 283 MobiDBLite consensus disorder prediction 1 50 - -
Viun6g02284 283 NCBIfam myb-like DNA-binding domain, SHAQKYF class 70 123 IPR006447 GO:0003677
Viun6g02284 283 SUPERFAMILY Homeodomain-like 68 124 IPR009057 -
Viun6g02284 283 Pfam Myb-like DNA-binding domain 72 122 IPR001005 -
Viun6g02284 283 MobiDBLite consensus disorder prediction 9 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02284 Viun-Chr6 28314984 28319017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02284 61 127 G2-like Transcription Factor Family AT2G42660 77.612 4.88e-31 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Viun6g02284 Myb_DNA-binding 1.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02284 - - pvu:PHAVU_006G149000g 436.032