Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02268 ATGGACTGGACCCGAGGCCACATGCTCGGCCGTGGTTCCACCGCCGCCGTCTACACCGCTCAGTCCCGCCGATCCGCTCCCGTCTTTGCCGTCAAGTCGGCAGAGCTACACCACTCGGAATTCCTCCGAAGGGAGCAGATGATTCTTTCCACTCTTAACTGTCCTCATATTGTTGCCTACCAAGGTTTTGACACCACGTTTGAGAATGGTGTTTACTGGTTCAACATGTTCATGGAATACGCGCCTCACGGGACGCTGGCGGAGCGCGGTGGTCGCATGGACGAAGCGGTGGTGGGATCCTATACGCGCCAAATTCTGCAGGGGCTGCACTACCTCCACTCCCGTGGGATAGTGCATTGCGACGTGAAGGGGCAGAATGTATTGGTGACGGAGAAGGGGGTGAAAATTTCGGATTTGGGTTGTGCCCGGAGGGTGGGGGAGGTGTCGGCCATCGCCGGCACGCCGGCGTTCATGTCTCCTGAGGTGGCGCGTGGGGAGCAGCAGGGGTTTCCTGCTGACGTGTGGGCTCTGGGGTGCACGGTACTGGAGATGATCACCGGGAAGCCACCGTGGCACGGCGGAGGAGACCCGGCGGGAGTGATTTACAGGATCGGGTTCTCCGATGAGTTGCCTGAGATTCCTAGCTGTGTGTCCGAGCAGGGGAGGGACTTTTTGGGAAAGTGTTTGAAGAGGGACCCGAATGAGAGGTGGTCGGTGGAGGAGCTTCTTGGACACGGTTTTGTTAAGGAATGCACGGAATTGAAGTTGCTTTTGTTGGATTCAGACACTCCCACTGGTGTGTTGGAACGAGGATTTTGGGATTCCTTGGAGACAACTGAGCATGGAGCACGTGATTGTCCCTCTGCTAGGGACAGAATTCGTAGGTTGTTTTCGGACGAACCCCTTTGGGTATGGAAAAACGATGATGATAATGATGATGAGCAATGGGTGACGGTGAGGAGCAATGAGTTCCATGAAGAATTATCCTTTCACAAAACAGACACTACTTCTTTTAATATAGTTAGTGATGAGGAAAACGGTTTTGTTACATTATTTGAACCTAAAATTGTAGTAACAACAGTAGTTGAATTGAGTAGATGGAATGGTATTACTTGTGATGATTGTTATCTTGGAGGCAGAAACTGTGATTGTCGCTGCAGAGAATCATTATTGTCAGTTTTTGTGTGTGTAGTGATTGTTCTCGATGGAAAATTTGATTCTCCTGAGATGGGAATTTTTATTTTTATCATGCATTGCTTTCTGTTACTGCTCTCTCTGTCTCTCTTTAATTCAACTTTGGATGGACTCAACACTTTTCATTTTCATCACTATAATATAATACGGGATAATGTGTGCGCCACATAA 1365 0.4967 MDWTRGHMLGRGSTAAVYTAQSRRSAPVFAVKSAELHHSEFLRREQMILSTLNCPHIVAYQGFDTTFENGVYWFNMFMEYAPHGTLAERGGRMDEAVVGSYTRQILQGLHYLHSRGIVHCDVKGQNVLVTEKGVKISDLGCARRVGEVSAIAGTPAFMSPEVARGEQQGFPADVWALGCTVLEMITGKPPWHGGGDPAGVIYRIGFSDELPEIPSCVSEQGRDFLGKCLKRDPNERWSVEELLGHGFVKECTELKLLLLDSDTPTGVLERGFWDSLETTEHGARDCPSARDRIRRLFSDEPLWVWKNDDDNDDEQWVTVRSNEFHEELSFHKTDTTSFNIVSDEENGFVTLFEPKIVVTTVVELSRWNGITCDDCYLGGRNCDCRCRESLLSVFVCVVIVLDGKFDSPEMGIFIFIMHCFLLLLSLSLFNSTLDGLNTFHFHHYNIIRDNVCAT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02268 454 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Viun6g02268 454 Gene3D Transferase(Phosphotransferase) domain 1 2 280 - -
Viun6g02268 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 117 129 IPR008271 GO:0004672|GO:0006468
Viun6g02268 454 SMART serkin_6 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02268 454 Pfam Protein kinase domain 5 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02268 454 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 332 - -
Viun6g02268 454 CDD STKc_MAPKKK 2 248 - -
Viun6g02268 454 ProSiteProfiles Protein kinase domain profile. 3 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02268 454 SUPERFAMILY Protein kinase-like (PK-like) 2 269 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02268 Viun-Chr6 28255759 28257230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02268 1 276 MAP Kinase Kinase Kinase AT2G32510 53.448 1.96e-106 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g02268 Pkinase 1.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02268 K20716 - gmx:100802174 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03096 5 42079152 42080718 Viun6g02268 6 28255759 28257230 ECH
Viun6g02268 6 28255759 28257230 Viun6g02268 6 28255759 28257230 ECH
Viun6g02268 6 28255759 28257230 Viun3g06112 3 64678768 64680174 ECH