Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02266 ATGGACAAAGGATGGGGACTCACCCTTGATACCTCTTCCTCGCAATCTCTCTCATTATTACCTTCCAAACAGCCTTCCACTTCTTTAACCAAACTCACCGGCGACACCATGTTCCCTCTCCTCGGATTCCCCGTCAACCTTAGCCGCCCCGCTGCCAAGGACGACGAACACAACCGCAAAGTCCTCGGTGAAGTCGACTTCTTCTCTGATAGACTCACCAAACCAACATCCCCACCCTCCCACGACCACCACGTTAAACCCAACATCGTCAAGAAGGAAATTGTTGAAACACCTCTCCACGTTAATACTGGTTTACAACTCCTTACTGCTAACACCGGGAGTGACCAATCCACCGTCGATGACGGGGTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACTGAGCTTGCGCAGATGCAAGTGGAACTTCAACGCATGAACGCAGAGAACAAGAAGCTGAAAGAGATGCTAAGCCATGTGACCGGTAACTACACGGCCTTGCAGATGCATCTCATGACATTAATGCATCAGAACCAGCGGACAGTGAACACAGAAAATGAGGTTGTTCAGGGAAAGGCCGGGGATAAAAATGATGGTGTTGGTGGAGGAAAGGTTCCAAGACAGTTCCTTGATATAGGTCCAAGTGGCGCAGCCGAAGCAGATGACCAAGTGTCTGACTCTTCTTCCGATGAGAGAACACGATCGAGCACACCTCAGAACAATAATATTGAAGTTGGAACGAGAGACGGTGCGAGAAATGTTAATGCCAAAAGAGAGTTGGGTAGGGAAGAGAGCCCAGACTCAGAATCCCAAGGTTGGGCTACTAATAAGCTTCAGAAAGTTAACCCTTCCAATGCTATCGATCAATCCACTACAGAAGCCACAATGAGAAAAGCTCGTGTCTCAGTTCGTGCCCGATCAGAAGCTCCCATGATAAGCGATGGGTGCCAATGGCGAAAATATGGACAAAAAATGGCCAAGGGGAACCCATGTCCTCGAGCATATTATAGATGCACTATGGCAGTTGGTTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGATAGAACAATTTTGGTTACAACTTATGAAGGTACACATAACCATCCACTTCCACCAGCAGCTATGGCCATGGCGTCAACCACTACAGCTGCTGCTAGCATGTTACTCTCAGGGTCAATGTCCAGTGCAGATGGAATAATGAATCCCAATTTGCTAGCCAGAGCAATTATTCCTTGCAATTCTAGCATGGCAACACTATCAGCTTCGGCGCCATTTCCAACTGTGACTTTGGACCTCACACATAACCCGAACCCTTTGCAATTTCAGAGAGCAGCTACCCCATTCCAAGTGCCCTTCCTCCAAGGGCAGCCTCAGAACTTTGGGTCCGGAGCCACCCCAATTGCACAAGCACAAGCTCTTTATAATCAATCGAAATTCTCTGGTCTTCAACTGTCTCAGGAAGTAGGTTCCTCCCAGTTGGCCGCACAAGCCTCTAGACCACCCTTACAGCCTAGCCAGCAACCCTCGTCGGCTGATACAGTCAGTGCCGCCGCGGCCGCTATCACCGCCGATCCAAACTTCACCGCCGTCCTCGCCGCCGCCATCTCCTCTATCATAGGCGGTGCTCATAATGCAAACAATAACACCAATAACAACAACAGCACAAGCAGAACTACCATTAGCAGCTTTTCAGGAAACTGA 1710 0.493 MDKGWGLTLDTSSSQSLSLLPSKQPSTSLTKLTGDTMFPLLGFPVNLSRPAAKDDEHNRKVLGEVDFFSDRLTKPTSPPSHDHHVKPNIVKKEIVETPLHVNTGLQLLTANTGSDQSTVDDGVSSDAEDKRAKTTELAQMQVELQRMNAENKKLKEMLSHVTGNYTALQMHLMTLMHQNQRTVNTENEVVQGKAGDKNDGVGGGKVPRQFLDIGPSGAAEADDQVSDSSSDERTRSSTPQNNNIEVGTRDGARNVNAKRELGREESPDSESQGWATNKLQKVNPSNAIDQSTTEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILVTTYEGTHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAIIPCNSSMATLSASAPFPTVTLDLTHNPNPLQFQRAATPFQVPFLQGQPQNFGSGATPIAQAQALYNQSKFSGLQLSQEVGSSQLAAQASRPPLQPSQQPSSADTVSAAAAAITADPNFTAVLAAAISSIIGGAHNANNNTNNNNSTSRTTISSFSGN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02266 569 MobiDBLite consensus disorder prediction 252 267 - -
Viun6g02266 569 MobiDBLite consensus disorder prediction 494 514 - -
Viun6g02266 569 ProSiteProfiles WRKY domain profile. 308 374 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g02266 569 SMART WRKY_cls 313 373 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g02266 569 MobiDBLite consensus disorder prediction 112 132 - -
Viun6g02266 569 MobiDBLite consensus disorder prediction 546 569 - -
Viun6g02266 569 Coils Coil 130 164 - -
Viun6g02266 569 MobiDBLite consensus disorder prediction 231 249 - -
Viun6g02266 569 MobiDBLite consensus disorder prediction 269 298 - -
Viun6g02266 569 MobiDBLite consensus disorder prediction 183 307 - -
Viun6g02266 569 MobiDBLite consensus disorder prediction 1 26 - -
Viun6g02266 569 SUPERFAMILY WRKY DNA-binding domain 306 374 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g02266 569 MobiDBLite consensus disorder prediction 7 26 - -
Viun6g02266 569 Pfam WRKY DNA -binding domain 315 372 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g02266 569 Gene3D WRKY domain 298 375 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g02266 569 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 109 558 IPR044810 GO:0003700
Viun6g02266 569 FunFam probable WRKY transcription factor 31 298 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02266 Viun-Chr6 28234010 28236735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02266 1 556 WRKY Transcription Factor Family AT1G62300 52.013 1.78e-161 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun6g02266 WRKY 6.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02266 - - pvu:PHAVU_006G147800g 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02266 6 28234010 28236735 Viun6g02266 6 28234010 28236735 ECH
Viun5g03098 5 42098657 42101741 Viun6g02266 6 28234010 28236735 ECH
Viun11g01611 11 32522485 32524805 Viun6g02266 6 28234010 28236735 ECH