Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02253 ATGAAACAAAAGAAGTCAAAGGATCATACTGATTATAAGACCAAGTTCTCAAGTCCTGCAAAATCCTCTGGAATTCGAAAGAGATCGAATGAGCAATACTTATCTAAGTGTCCAAAATCAGGAGAAAATGGAGAAGCTCCTATTGTACTAGAAGAACTGTCAAACCGATATACTGATAACCTTATTGGAAAAATACCAAGATGCTCAAGAGGTTTTGGAAGTTCAAAACGGAGAAAGGATGCAGAGACAACTTCTAAAAAGTGTCATCAGTGTAGGAAAAAGGAAAGAGCAGTATTCACACTATTGCAAAATATAACAATTTCTCATTTTACACATAGGTATCCAAATCTTACAGTATCAGACATTTCACACGAGTGTCCCTTTTGCCGAAACAATTGCAATTGCAGTGTTTGCTTGCGCTCAAGAGGAACGATTAAGACATCTAACAGCAGCATCACAGACGAAGAAAGGGTTCAACATCTCCAATACATGATTAACTTACTCATTCCATTTATACAACACATTTGTGAAGAACAAAGTCAAGAGCTCGAGATTGAAGCTAAAATACAAGGAAAATCAAGTTCTGAGATTGAGATACCACAAACATCTTGTGAGAATGAACGTATCTATTGTGACCATTGTGCTACTTCATTTACTGATCTTTATCGAAGCTGCCCCGAGTGTTCCTTTGAAATCTGCCTTAACTGTTGCAAAGAAATACGCAATGGAAGTATATCACCGCGGTGTAATATGAAGTTTCAATATGTGAATAAGGGGTGTGATTATATGCATGGTGGTGATCCATTACCAGTGTCTAGTGATTTTGGGACTTTAAGAGGTCATTCTAAGATATTTAGCAAATGGGAGGCCAACAGTGATGGAGGTATTAGATGTGCACCAAAAGAAATGGGGGGTTGTGGTGGTCATGTGATGGAGCTGAGGCGCATTTTTTTAAACGGGTGGATATCAGACTTGGAAGCCAAAGCTCGTAACATGGTAAAAGGTTTTTCTAAAACTGAACAAACAGTTCTTCAGAAAGAAGCAATATCAAGTTGCAATTCTAAGATAAGAGCAGCTTTTAGAGATGGCACAAGTGATAATAACTTATACTGTCCATTGTCAAGTGACCTCATAAATGAAGGGTTGCTTCTCTTCCAAAAACATTGGACTCAAGGAGAACCAATCATAGTTCGTGATGTTCTTAAGCAGGGTACAGGTCTTAGTTGGGAGCCAATGGTCACATTAAGAGCCCTATGTGAAAACGGGGTTCCAGGAATCAGCTCAAATACTACTGAATTAAAGGCCATTGATTGCCTTTCTTGTTGTGAGGTAGAAATCAATACTCGTACATTCTTCAAGGGTTATACACAAGGAAGAGCATATGCAAATCTCTGGCCAGAGATGCTGAAGTTAAAAGACTGGCCTCCCTCTGACAAGTTTGATGATCTTTTGCCTCGCCATTGTGACGAGTTTATCCGCTGTTTGCCATTTCAAGAGTATTGTGATCCTCAAAATGGGATCCTCAACCTTGCTGTAAAGTTGCCATCCCATGTTCTAAAGCCAGACCTTGGTCCAAAAACATACATTGCTTATGGGATTAAAGAGGAACTTGGCAGAGGAGATTCAGTAACAAAACTTCACTGTGATATGTCTGATGCTGTGAATATTTTGATCCACACGACTGAGGTAACATTGAGTGATGAACAACATTCTGCTATTCCAAAACTGAAAAAAGCACACATTGCCCAAGATGAGAAAGAGGGACGTGCTCGAGGAAGGGTCGATGAATTCCTGAATGAAGGACTTTGCAAAGACAACAGAGAAGAATATAAGAGTTCTGTTTCTAAAGAAACAGGTGGTGCTCTTTGGGACATCTTTCGGAGAGAGGATACTGAAAAGTTAGAAGCATATCTAAGAAAGCACTCTAAAGAATTTAGGCATACTTATTGCTCTCCAGTTGAAGAGGTTGTCCATCCAATTCATGACCAATGCTTTTACCTGACTTTGGAACACAAGAAGAATCTGAAGAAGGAGTTTGGTGTAGAACCTTGGACTTTTGAGCAACAACTTGGGGAGGCAGTATTTATTCCTGCGGGATGTGCACACCAAGTCAGGAATCTTAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCAGAAAATGTCCATATGTGCCTGCATTTAACTGAAGAGTTCCGTCGTCTTCCCAAGAATCACAAGGCCAGAGAAGATAAACTTGAGATACAGAAAATGATAGTCTATGCTGTTGACAGTGCTGTCAAAGAATTAGAAACTTTACGTTCTTGA 2310 0.3957 MKQKKSKDHTDYKTKFSSPAKSSGIRKRSNEQYLSKCPKSGENGEAPIVLEELSNRYTDNLIGKIPRCSRGFGSSKRRKDAETTSKKCHQCRKKERAVFTLLQNITISHFTHRYPNLTVSDISHECPFCRNNCNCSVCLRSRGTIKTSNSSITDEERVQHLQYMINLLIPFIQHICEEQSQELEIEAKIQGKSSSEIEIPQTSCENERIYCDHCATSFTDLYRSCPECSFEICLNCCKEIRNGSISPRCNMKFQYVNKGCDYMHGGDPLPVSSDFGTLRGHSKIFSKWEANSDGGIRCAPKEMGGCGGHVMELRRIFLNGWISDLEAKARNMVKGFSKTEQTVLQKEAISSCNSKIRAAFRDGTSDNNLYCPLSSDLINEGLLLFQKHWTQGEPIIVRDVLKQGTGLSWEPMVTLRALCENGVPGISSNTTELKAIDCLSCCEVEINTRTFFKGYTQGRAYANLWPEMLKLKDWPPSDKFDDLLPRHCDEFIRCLPFQEYCDPQNGILNLAVKLPSHVLKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILIHTTEVTLSDEQHSAIPKLKKAHIAQDEKEGRARGRVDEFLNEGLCKDNREEYKSSVSKETGGALWDIFRREDTEKLEAYLRKHSKEFRHTYCSPVEEVVHPIHDQCFYLTLEHKKNLKKEFGVEPWTFEQQLGEAVFIPAGCAHQVRNLKSCTKVAVDFVSPENVHMCLHLTEEFRRLPKNHKAREDKLEIQKMIVYAVDSAVKELETLRS 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02253 769 FunFam Transcription factor jumonji domain-containing protein 366 743 - -
Viun6g02253 769 SUPERFAMILY Clavaminate synthase-like 384 767 - -
Viun6g02253 769 Gene3D Cupin 364 743 - -
Viun6g02253 769 MobiDBLite consensus disorder prediction 1 15 - -
Viun6g02253 769 SMART cupin_9 484 734 IPR003347 -
Viun6g02253 769 Pfam JmjC domain, hydroxylase 620 717 IPR003347 -
Viun6g02253 769 ProSiteProfiles JmjC domain profile. 503 734 IPR003347 -
Viun6g02253 769 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 19 768 IPR045109 GO:0032454|GO:0033169
Viun6g02253 769 MobiDBLite consensus disorder prediction 1 44 - -
Viun6g02253 769 MobiDBLite consensus disorder prediction 16 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02253 Viun-Chr6 28171827 28175657 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Viun6g02253 JmjC 6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02253 K15601 K21989 gmx:100801772 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02253 6 28171827 28175657 Viun6g02253 6 28171827 28175657 ECH
Viun3g06099 3 64629969 64635157 Viun6g02253 6 28171827 28175657 PCT