Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02252 ATGACCACACATTCGACAACAAAACCAAAGCCACACCATCTTTTCCTTCTCTTAATTCAGTTGTTAATTTCCACTGGAGTGAAAGGTGGCTGTGATTCTGGTTGCGACCTTGCTCTAGCTTCCTACTACATAGCGGAGGGCCGGAACCTCACATTCATTAGCAATCTTTTCGGAAAGCCCACATCGGAGATTCTCAAGTACAACCCAAGCGTGAAAGACCCCAACGTCATTGAAAGCCAAACGCGGATCAACGTGCCGTTCTCGTGTGAGTGCTTAAACGGGGAGTTTTGGGGGCACACTTTCTTGTACCGGATCCAACACGGCGACACCTACAAGGTTATTGCGAATACCAGTTTCTCCAACCTCACCACCGAGGATTGGGTGAGTAGGGTCAACAGTTACCCGTCCACTCAGATTCCCGACAACGTTAACGTCAACGTTACCATCAACTGCTCCTGCGGAAACCGACACGTGTCCAAGCATTATGGGCTGTTTCTGACTTACCCGCTTCGGCTGGGTGATGACTTGCAAGGGGTTGCGGCGGAATCCGGTGTGCCGGCGGAGCTGCTGGTACGCTACAACCCCACCTCCGATTTCAGTTCTGGGAATGGACTTGTCTTCGTGCCGGCTAAAGATGAAAATGGAAACTTTCCACCTATGAAGCTGAGATCAGGAATATCTGGTGGAGCCATTGCTGGCATAGCCGTTGCAGGAGCTTCTGTGGTCTTAGTTTTGGCACTTGTTCTATATGTTGGACTACACAGAAGAAGAAAAGTGGCTGAGGTATCCCTTCTCACACTCCCAGGAGCATCTGAAGATCAGTGTAGTCCACTCTATCATGGTTTGGGAAACAGCTTGGACAAGGCATCGGAATCTTCGGTTGTTGCTTCTCCAAGGATGACAGGGATTACAGTGGACAAGTCAGTGGAGTTCTCATATGGGGAGCTAGACAAGGCCACTGATGGCTTTAGTGTGGCTAATATAATTGGTCAAGGAGGCTTTGGATCTGTTTACTATGCTCAGCTTCGGAATGAGAAAGCTGCAATTAAAAAGATGGATATGCAAGCATCAAATGAATTCCTAGCAGAACTCAAGGTTCTAACTCATGTCCATCACTTGAACCTGGTGCGGTTAATAGGATATTGTGTTGAGGGCTCCTTGTTTCTGGTTTATGAGTATATTGAGAACGGCAATTTAAGCCAACATTTGCGAGGCTCAGGGAGGGATTCGTTAACATGGGGAGCTAGAGTGCAAATTGCTCTTGATGCAGCAAGAGGATTGGAATACATCCATGAGCATACAGTTCCTGTCTACATCCATAGAGATATTAAATCAGCAAACATCTTGATAGACAAAAACTTTCGTGCAAAGGTTGCAGATTTTGGTCTCACAAAATTGACTGAGTATGGTAGTTCTTCATTACACACGCGTCTTGTGGGTACCTTTGGTTATATGCCTCCAGAATATGCACAATATGGTGATGTTTCCTCGAAAGTAGATGTATATGCTTTTGGAGTTGTTCTGTATGAACTCATATCAGGCAAGGAAGCTATTGTCAAGACAAACGATCCTGAGGGTGAATCAAAAGGACTAGTCGCCTTGTTTGAAGAAGTTCTTGGTCTGTCAGATCCAAAAGAAGATCTTCGTCAACTTGTTGACCCTAGACTTGGTGACAACTACCCTCTTGACTCTGTATTCAAGGTGTCTCAGCTTGCGAAAGCATGTACACATGAAAACCCTCAACTTAGGCCAAGCATGAGATCAATTGTTGTTGCGTTAATGACACTTTCGTCTGCAACTGAGGATTGGGATGTTGGTTCCTTCTATGAAAACCAAGCTTTAGTGCACCTTATGTCTGGAAGGTAG 1866 0.4582 MTTHSTTKPKPHHLFLLLIQLLISTGVKGGCDSGCDLALASYYIAEGRNLTFISNLFGKPTSEILKYNPSVKDPNVIESQTRINVPFSCECLNGEFWGHTFLYRIQHGDTYKVIANTSFSNLTTEDWVSRVNSYPSTQIPDNVNVNVTINCSCGNRHVSKHYGLFLTYPLRLGDDLQGVAAESGVPAELLVRYNPTSDFSSGNGLVFVPAKDENGNFPPMKLRSGISGGAIAGIAVAGASVVLVLALVLYVGLHRRRKVAEVSLLTLPGASEDQCSPLYHGLGNSLDKASESSVVASPRMTGITVDKSVEFSYGELDKATDGFSVANIIGQGGFGSVYYAQLRNEKAAIKKMDMQASNEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIENGNLSQHLRGSGRDSLTWGARVQIALDAARGLEYIHEHTVPVYIHRDIKSANILIDKNFRAKVADFGLTKLTEYGSSSLHTRLVGTFGYMPPEYAQYGDVSSKVDVYAFGVVLYELISGKEAIVKTNDPEGESKGLVALFEEVLGLSDPKEDLRQLVDPRLGDNYPLDSVFKVSQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVHLMSGR 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02252 621 Gene3D Transferase(Phosphotransferase) domain 1 394 605 - -
Viun6g02252 621 FunFam LysM receptor kinase 2 302 393 - -
Viun6g02252 621 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 17 607 IPR044812 GO:0019199|GO:0045087
Viun6g02252 621 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Viun6g02252 621 ProSiteProfiles Protein kinase domain profile. 323 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02252 621 FunFam PTI1-like tyrosine-protein kinase 3 394 607 - -
Viun6g02252 621 SMART serkin_6 323 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g02252 621 CDD STKc_IRAK 329 590 - -
Viun6g02252 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Viun6g02252 621 Gene3D Phosphorylase Kinase; domain 1 304 393 - -
Viun6g02252 621 Pfam Protein tyrosine and serine/threonine kinase 326 592 IPR001245 GO:0004672|GO:0006468
Viun6g02252 621 ProSiteProfiles LysM domain profile. 40 85 IPR018392 -
Viun6g02252 621 SUPERFAMILY Protein kinase-like (PK-like) 303 593 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02252 Viun-Chr6 28161890 28167669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02252 16 621 Receptor kinase-like Gene Family AT3G21630 54.870 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun6g02252 PK_Tyr_Ser-Thr 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02252 - K13429 gmx:100802308 1051.2